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Accession: PRJNA338256 ID: 338256

Fusarium

Fusarium spp. isolated from onion bulbs - F. oxysporum, F. oxysporum f. sp. cepae and F. profileratum.

Development of onion lines with robust resistance to Fusarium basal rot requires understanding of the interaction between the pathogens and their hosts. More...
AccessionPRJNA338256
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsArmitage AD et al., "Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae.", Sci Rep, 2018 Sep 10;8(1):13530
Grants
  • "Exploiting next generation sequencing technologies to understand pathogenicity and resistance in Fusarium oxysporum" (Grant ID BB/K020870/1, Biotechnology and Biological Sciences Research Council)
SubmissionRegistration date: 9-Aug-2016
NIAB-EMR
Related Resources
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8619
WGS master8
SRA Experiments34
Protein Sequences145984
Publications
PubMed1
PMC1
Other datasets
BioSample33
Assembly8
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases161
Data volume, Mbytes78806

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