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1 additional project is a component of the DNA methylation and gene expression profiling of primary medulloblastoma samples.
Affimetrix Human Gene 1.1 ST Array profiling of 763 primary medullobalstoma samples used for identification of Medullobastoma subtypes
Overall design: We collected 763 fresh frozen primary medulloblastoma samples for RNA extraction and hybridization on Affimetrix microarrays
| Accession | PRJNA336572; GEO: GSE85217 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | - Ramaswamy V et al., "Bioinformatic Strategies for the Genomic and Epigenomic Characterization of Brain Tumors.", Methods Mol Biol, 2019;1869:37-56
- Cavalli FMG et al., "Intertumoral Heterogeneity within Medulloblastoma Subgroups.", Cancer Cell, 2017 Jun 12;31(6):737-754.e6
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| Submission | Registration date: 4-Aug-2016
Developmental and Stem Cell, The Hospital for Sick Children |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 1 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 16512083 |
| Data volume, Processed Mbytes | 487 |
| Data volume, Supplementary Mbytes | 3328 |