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Organizing biological data
calling of differentially methylated regions (Juhling et al., 2016b). DMRs were scanned for overlap with linked regions and the target genes used for prediction of RNA expression differences. Motif analysis of DMRs was conducted using the PWMEnrich package (http://www.bioconductor.org/packages/2.12/bioc/html/PWMEnrich.html) with Hocomoco and Factorbook motif databases provided in the motifbreakR package (Coetzee et al., 2015) Less...
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