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Accession: PRJNA335628 ID: 335628

Mus musculus (house mouse)

Zac1 is a regulator of the imprinted gene network (RNA-seq)

See Genome Information for Mus musculus
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This project is a component of the Genome-wide characterization of Zac1 target genes reveals its role as a broad regulator of the imprinted gene network including extracellular matrix genes
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2 additional projects are components of the Genome-wide characterization of Zac1 target genes reveals its role as a broad regulator of the imprinted gene network including extracellular matrix genes.
47588 additional projects are related by organism.
In order to determine the imprinted transcription factor Zac1 targets, we overexpressed Zac1 in a mouse insulinoma cell line and measured the regulated expressed genes by RNA-seq. More...
AccessionPRJNA335628; GEO: GSE84914
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsVarrault A et al., "Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network.", Nucleic Acids Res, 2017 Oct 13;45(18):10466-10480
SubmissionRegistration date: 27-Jul-2016
Functional Genomics of Imprinted Genes, CNRS 5203, INSERM U661, Institut de Génomique Fonctionnelle
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments8
Publications
PubMed1
PMC1
Other datasets
BioSample8
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases26
Data volume, Mbytes13200

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