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Accession: PRJNA335610 ID: 335610

Oncorhynchus mykiss isolate:Swanson (rainbow trout)

Re-sequencing the rainbow trout doubled haploid Swanson line for generating a new reference genome assembly

See Genome Information for Oncorhynchus mykiss
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232 additional projects are related by organism.
In an effort to improve the rainbow trout reference genome sequence, we have re-sequenced the doubled haploid Swanson line using longer Illumina technology reads. More...
AccessionPRJNA335610
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismOncorhynchus mykiss[Taxonomy ID: 8022]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus; Oncorhynchus mykiss
Publications
  • Pearse DE et al., "Sex-dependent dominance maintains migration supergene in rainbow trout.", Nat Ecol Evol, 2019 Dec;3(12):1731-1742
  • Zardoya R et al., "The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss.", J Mol Evol, 1995 Dec;41(6):942-51
Grants
  • "Integrated Research Approaches for Improving Production Efficiency in Salmonids" (Grant ID 8082-31000-012, United States Dept of Agriculture, ARS)
SubmissionRegistration date: 31-May-2017
USDA/ARS
RelevanceAgricultural
Locus Tag PrefixBEH89
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)30
WGS master1
SRA Experiments5
Publications
PubMed2
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_002163495.1ChromosomeMSJN00000000
29
SAMN05449231
Oncorhynchus mykiss
SRA Data Details
ParameterValue
Data volume, Gbases587
Data volume, Tbytes0.32
Related RefSeq Project
PRJNA390662 : Oncorhynchus mykiss isolate:Swanson RefSeq Raw sequence reads

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