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Accession: PRJNA321218 ID: 321218

metagenome

human gut and groundwater harbor non-photosynthetic bacteria

S. C. Di Rienzi, I. Sharon, K. C. Wrighton, O. Koren, L. A. Hug, B. C. Thomas, J. More...
AccessionPRJNA321218
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmetagenome[Taxonomy ID: 256318]
unclassified sequences; metagenomes; metagenome
Publications
  • Brown CT et al., "Measurement of bacterial replication rates in microbial communities.", Nat Biotechnol, 2016 Dec;34(12):1256-1263
  • Di Rienzi SC et al., "The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.", Elife, 2013 Oct 1;2:e01102
SubmissionRegistration date: 23-Dec-2016
None
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)13100
WGS master109
Genomic DNA1
SRA Experiments3
Protein Sequences217720
Publications
PubMed2
PMC2
Other datasets
BioSample113
Assembly110
Assembly details:
Assembly levelNumber of Assemblies
1
108
1
110
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_001917135.1ScaffoldMNTT00000000
SAMN05717303
46_36
GCA_001917235.1ScaffoldMNTZ00000000
SAMN05717309
CAG:196_36_41
GCA_001917295.1ScaffoldMNUD00000000
SAMN05717313
54_46
GCA_001915335.1ScaffoldMNQH00000000
SAMN05717213
CAG:67_53_122
GCA_001915255.1ScaffoldMNQE00000000
SAMN05717210
56_11
GCA_001915285.1ScaffoldMNQF00000000
SAMN05717211
56_sp_Nov_56_25
GCA_001915305.1ScaffoldMNQG00000000
SAMN05717212
58_9_plus
GCA_001917125.1ScaffoldMNTU00000000
SAMN05717304
47_25
GCA_001917175.1ScaffoldMNTV00000000
SAMN05717305
51_20
GCA_001915345.1ScaffoldMNQI00000000
SAMN05717214
43_36
GCA_001915365.1ScaffoldMNQJ00000000
SAMN05717215
43_8
GCA_001915385.1ScaffoldMNQK00000000
SAMN05717216
52_46
GCA_001915415.1ScaffoldMNQL00000000
SAMN05717217
55_9
GCA_001915495.1ScaffoldMNQP00000000
SAMN05717221
42_12
GCA_001915515.1ScaffoldMNQQ00000000
SAMN05717222
45_34
GCA_001915435.1ScaffoldMNQM00000000
SAMN05717218
41_26
GCA_001915545.1ScaffoldMNQS00000000
SAMN05717224
43_108
GCA_001915455.1ScaffoldMNQN00000000
SAMN05717219
43_46
GCA_001915465.1ScaffoldMNQO00000000
SAMN05717220
44_46
GCA_001915575.1ScaffoldMNQT00000000
SAMN05717225
CAG:1060_57_27
GCA_001915595.1ScaffoldMNQU00000000
SAMN05717226
45_41
GCA_001915185.1ScaffoldMNPZ00000000
SAMN05717205
56_10
GCA_001915215.1ScaffoldMNQB00000000
SAMN05717207
62_13
GCA_001915175.1ScaffoldMNQA00000000
SAMN05717206
56_9_plus
GCA_001915695.1ScaffoldMNRA00000000
SAMN05717232
CAG:37_48_57
GCA_001915615.1ScaffoldMNQW00000000
SAMN05717228
43_13
GCA_001915735.1ScaffoldMNRB00000000
SAMN05717233
37_264
GCA_001917115.1ContigMNTS00000000
SAMN05717302
35_41
GCA_001917285.1ScaffoldMNUB00000000
SAMN05717311
LEY3_CP_29_8
GCA_001765415.1Complete genomeSAMN05425469
MEL.A1
GCA_001915755.1ScaffoldMNRC00000000
SAMN05717234
36_14
GCA_001915765.1ScaffoldMNRD00000000
SAMN05717235
41_12_two_minus
GCA_001915775.1ScaffoldMNRE00000000
SAMN05717236
41_21_two_genomes
GCA_001915795.1ScaffoldMNRF00000000
SAMN05717237
42_27
GCA_001915835.1ScaffoldMNRG00000000
SAMN05717238
44_9
GCA_001915845.1ScaffoldMNRH00000000
SAMN05717239
45_37
GCA_001915855.1ScaffoldMNRI00000000
SAMN05717240
52_15
GCA_001915895.1ScaffoldMNRJ00000000
SAMN05717241
59_14
GCA_001915915.1ScaffoldMNRK00000000
SAMN05717242
Nov_37_41
GCA_001915995.1ScaffoldMNRO00000000
SAMN05717246
26_21
GCA_001916005.1ScaffoldMNRP00000000
SAMN05717247
26_22
GCA_001916035.1ScaffoldMNRQ00000000
SAMN05717248
27_14
GCA_001916055.1ScaffoldMNRR00000000
SAMN05717249
28_12
GCA_001916065.1ScaffoldMNRS00000000
SAMN05717250
28_17
GCA_001916075.1ScaffoldMNRT00000000
SAMN05717251
29_15
GCA_001916115.1ScaffoldMNRU00000000
SAMN05717252
42_12
GCA_001916135.1ScaffoldMNRV00000000
SAMN05717253
44_14
GCA_001916165.1ScaffoldMNRX00000000
SAMN05717255
CAG:12237_41
GCA_001915975.1ScaffoldMNRN00000000
SAMN05717245
CAG:217_53_7
GCA_001916175.1ScaffoldMNRY00000000
SAMN05717256
CAG:245_30_32
GCA_001916215.1ScaffoldMNRZ00000000
SAMN05717257
CAG:307_30_263
GCA_001915935.1ScaffoldMNRM00000000
SAMN05717244
CAG:349_48_7
GCA_001915925.1ScaffoldMNRL00000000
SAMN05717243
CAG:354_28_25
GCA_001916225.1ScaffoldMNSA00000000
SAMN05717258
CAG:62_40_43
GCA_001916155.1ScaffoldMNRW00000000
SAMN05717254
CAG_433_25_7
GCA_001915225.1ScaffoldMNQC00000000
SAMN05717208
60_9
GCA_001916245.1ScaffoldMNSB00000000
SAMN05717259
28_7
GCA_001916255.1ScaffoldMNSC00000000
SAMN05717260
CAG:235_29_27
GCA_001916295.1ScaffoldMNSD00000000
SAMN05717261
43_8
GCA_001916315.1ScaffoldMNSF00000000
SAMN05717263
CAG:131-related_45_246
GCA_001916305.1ScaffoldMNSE00000000
SAMN05717262
CAG:131_42_139
GCA_001917195.1ScaffoldMNTW00000000
SAMN05717306
64_16
GCA_001916345.1ScaffoldMNSG00000000
SAMN05717264
42_8
GCA_001915265.1ScaffoldMNQD00000000
SAMN05717209
51_9
GCA_001916375.1ScaffoldMNSH00000000
SAMN05717265
36_13
GCA_001916385.1ScaffoldMNSI00000000
SAMN05717266
38_16
GCA_001916395.1ScaffoldMNSJ00000000
SAMN05717267
41_20
GCA_001916415.1ScaffoldMNSK00000000
SAMN05717268
45_250
GCA_001916455.1ScaffoldMNSL00000000
SAMN05717269
CAG76_36_125
GCA_001916555.1ScaffoldMNSR00000000
SAMN05717275
61_16
GCA_001916545.1ScaffoldMNSQ00000000
SAMN05717274
60_20
GCA_001916535.1ScaffoldMNSP00000000
SAMN05717273
58_8
GCA_001916575.1ScaffoldMNSS00000000
SAMN05717276
CAG:74_58_120
GCA_001916495.1ScaffoldMNSO00000000
SAMN05717272
CAG:82-related_59_9
GCA_001916655.1ScaffoldMNSU00000000
SAMN05717278
CAG:110_56_8
GCA_001916625.1ScaffoldMNSV00000000
SAMN05717279
CAG:129_59_24
GCA_001916635.1ScaffoldMNSW00000000
SAMN05717280
CAG:137_57_8
GCA_001916695.1ScaffoldMNSX00000000
SAMN05717281
CAG:176_59_8
GCA_001916705.1ScaffoldMNSY00000000
SAMN05717282
CAG:176_63_11
GCA_001916715.1ScaffoldMNSZ00000000
SAMN05717283
CAG:24053_14
GCA_001916755.1ScaffoldMNTA00000000
SAMN05717284
CAG:272_52_7
GCA_001916775.1ScaffoldMNTB00000000
SAMN05717285
CAG:321_26_22
GCA_001916795.1ScaffoldMNTC00000000
SAMN05717286
CAG:552_39_19
GCA_001916785.1ScaffoldMNTD00000000
SAMN05717287
CAG:65_45_313
GCA_001916615.1ScaffoldMNST00000000
SAMN05717277
CAG_194_44_15
GCA_001916475.1ScaffoldMNSN00000000
SAMN05717271
37_24
GCA_001916465.1ScaffoldMNSM00000000
SAMN05717270
37_24
GCA_001917275.1ScaffoldMNUA00000000
SAMN05717310
CAG:611_25_7
GCA_001915655.1ScaffoldMNQX00000000
SAMN05717229
43_10
GCA_001916835.1ScaffoldMNTE00000000
SAMN05717288
57_20
GCA_001916855.1ScaffoldMNTF00000000
SAMN05717289
CAG:241_62_21
GCA_001915675.1ScaffoldMNQY00000000
SAMN05717230
45_40
GCA_001916865.1ScaffoldMNTG00000000
SAMN05717290
46_33
GCA_001915535.1ScaffoldMNQR00000000
SAMN05717223
45_130
GCA_001915605.1ScaffoldMNQV00000000
SAMN05717227
42_262
GCA_001915685.1ScaffoldMNQZ00000000
SAMN05717231
AG:487_50_53
GCA_001916935.1ScaffoldMNTJ00000000
SAMN05717293
43_16
GCA_001916945.1ScaffoldMNTK00000000
SAMN05717294
CAG:15_42_14
GCA_001916875.1ScaffoldMNTH00000000
SAMN05717291
40_7
GCA_001916965.1ScaffoldMNTL00000000
SAMN05717295
CAG:10041_57
GCA_001916975.1ScaffoldMNTM00000000
SAMN05717296
CAG:18_43_25
GCA_001916895.1ScaffoldMNTI00000000
SAMN05717292
CAG:197_41_10
GCA_001917015.1ScaffoldMNTN00000000
SAMN05717297
43_17
GCA_001917035.1ScaffoldMNTP00000000
SAMN05717299
37_24
GCA_001917065.1ScaffoldMNTQ00000000
SAMN05717300
CAG:108-related_41_35
GCA_001917045.1ScaffoldMNTO00000000
SAMN05717298
CAG:9-related_41_34
GCA_001917095.1ScaffoldMNTR00000000
SAMN05717301
60_17
GCA_001917205.1ScaffoldMNTX00000000
SAMN05717307
54_7
GCA_001917215.1ScaffoldMNTY00000000
SAMN05717308
63_29
GCA_001917305.1ScaffoldMNUC00000000
SAMN05717312
CAG:312_58_20
SRA Data Details
ParameterValue
Data volume, Gbases17
Data volume, Mbytes10483

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    metagenome
    human gut and groundwater harbor non-photosynthetic bacteria
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