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Accession: PRJNA316969 ID: 316969

Bacteria

Female Urinary Microbiota Genome Sequencing

Recently, bacterial communities (microbiota) have been discovered in the female bladder. More...
AccessionPRJNA316969
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "The Female Urinary Microbiome: Adjacent Microbiomes and Clinical Associations: Loyola Project" (Grant ID P20 DK108268, NIH National Institute of Diabetes and Digestive and Kidney Diseases)
  • "The Female Urinary Microbiome and Urinary Incontinence" (Grant ID R01 DK104718, NIH National Institute of Diabetes and Digestive and Kidney Diseases)
  • "Urinary Bacterial Communities in Urge Incontinence Women" (Grant ID R21 DK097435, NIH National Institute of Diabetes and Digestive and Kidney Diseases)
  • "The Female Urinary Microbiome and Urinary Incontinence" (Grant ID R56 DK104718, NIH National Institute of Diabetes and Digestive and Kidney Diseases)
  • "Knowledge of urinary microbes may improve OAB treatment success" (Grant ID VESI-12D01, Astellas Scientific and Medical Affairs, Inc.)
SubmissionRegistration date: 10-May-2016
Loyola University Chicago
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)18280
WGS master267
SRA Experiments188
Protein Sequences741555
Other datasets
BioSample294
Assembly267
Assembly details:
Assembly levelNumber of Assemblies
170
97
267
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_002872035.1ScaffoldPNHY00000000
SAMN07511379
UMB1319
GCA_002871995.1ScaffoldPNHW00000000
SAMN07511381
UMB0652
GCA_002871975.1ScaffoldPNHV00000000
SAMN07511382
UMB0286
GCA_002871945.1ScaffoldPNHU00000000
SAMN07511383
UMB0859
GCA_002860635.1ScaffoldPKKK00000000
SAMN08193634
UMB0731
GCA_002847585.1ScaffoldPKKP00000000
SAMN08193628
UMB0181
GCA_002860625.1ContigPKKO00000000
SAMN08193629
UMB0402
GCA_002860645.1ScaffoldPKKN00000000
SAMN08193630
UMB0125
GCA_002847555.1ScaffoldPKKL00000000
SAMN08193633
UMB0183
GCA_002849225.1ScaffoldPKMC00000000
SAMN08193631
UMB0138
GCA_002872055.1ScaffoldPNHT00000000
SAMN07511384
UMB0918
GCA_002861525.1ScaffoldPKHA00000000
SAMN08193636
UMB0319
GCA_002860725.1ScaffoldPKME00000000
SAMN08193626
UMB0086
GCA_002860685.1ContigPKMD00000000
SAMN08193627
UMB0063
GCA_002872015.1ScaffoldPNHX00000000
SAMN07511380
UMB0759
GCA_002861505.1ScaffoldPKGZ00000000
SAMN08193637
UMB0844
GCA_002847725.1ScaffoldPKGY00000000
SAMN08193638
UMB0139
GCA_002847705.1ScaffoldPKGX00000000
SAMN08193639
UMB0126
GCA_002847665.1ScaffoldPKGV00000000
SAMN08193641
UMB0072
GCA_002847625.1ScaffoldPKGW00000000
SAMN08193640
UMB0232
GCA_002871915.1ScaffoldPNHR00000000
SAMN07511386
UMB0080
GCA_002884955.1ContigPNHS00000000
SAMN07511385
UMB0088
GCA_002884575.1ScaffoldPNGB00000000
SAMN07580854
UMB0072b
GCA_003286725.1ScaffoldQMHE00000000
SAMN08895447
UMB2325
GCA_003286895.1ScaffoldQMGU00000000
SAMN08895437
UMB0239
GCA_003286875.1ScaffoldQMGV00000000
SAMN08895438
UMB0267
GCA_003286845.1ScaffoldQMGW00000000
SAMN08895439
UMB0337
GCA_003286825.1ScaffoldQMGX00000000
SAMN08895440
UMB0509
GCA_003286805.1ScaffoldQMGY00000000
SAMN08895441
UMB0553
GCA_003286715.1ScaffoldQMHD00000000
SAMN08895446
UMB1741
GCA_003286755.1ScaffoldQMHB00000000
SAMN08895444
UMB0722
GCA_003286695.1ScaffoldQMHF00000000
SAMN08895448
UMB2354
GCA_003286735.1ScaffoldQMHC00000000
SAMN08895445
UMB1016
GCA_003286635.1ScaffoldQMHK00000000
SAMN08895453
UMB6497
GCA_003286565.1ScaffoldQMHL00000000
SAMN08895454
UMB7382
GCA_003286665.1ScaffoldQMHG00000000
SAMN08895449
UMB2879
GCA_003286645.1ScaffoldQMHI00000000
SAMN08895451
UMB3669
GCA_003286595.1ScaffoldQMHH00000000
SAMN08895450
UMB3440
GCA_003286585.1ScaffoldQMHJ00000000
SAMN08895452
UMB5628
GCA_003286555.1ScaffoldQMHM00000000
SAMN08895455
UMB7480
GCA_003286515.1ScaffoldQMHA00000000
SAMN08895443
UMB0621
GCA_003286525.1ScaffoldQMGT00000000
SAMN08895436
UMB0071
GCA_003286795.1ScaffoldQMGZ00000000
SAMN08895442
UMB0574
GCA_002871935.1ScaffoldPNHQ00000000
SAMN07511387
UMB0240
GCA_002847765.1ScaffoldPKGU00000000
SAMN08193642
UMB0064
GCA_002861485.1ContigPKGT00000000
SAMN08193643
UMB0006
GCA_002871895.1ScaffoldPNHP00000000
SAMN07511388
UMB0204
GCA_002847745.1ScaffoldPKGS00000000
SAMN08193644
UMB0119
GCA_002871835.1ScaffoldPNHN00000000
SAMN07511390
UMB0500
GCA_002858875.1ScaffoldPKLA00000000
SAMN08193647
UMB0728
GCA_002858905.1ScaffoldPKLB00000000
SAMN08193646
UMB0893
GCA_002871465.1ScaffoldPNGA00000000
SAMN07511391
UMB0899
GCA_002861455.1ScaffoldPKGQ00000000
SAMN08193648
UMB0915
GCA_002871815.1ScaffoldPNHM00000000
SAMN07511392
UMB0089
GCA_002861445.1ScaffoldPKGP00000000
SAMN08193649
UMB0788
GCA_002871795.1ScaffoldPNHL00000000
SAMN07511393
UMB0905
GCA_002871435.1ScaffoldPNFZ00000000
SAMN07511394
UMB0680
GCA_002871875.1ScaffoldPNHK00000000
SAMN07511395
UMB1301
GCA_002861415.1ScaffoldPKGO00000000
SAMN08193650
UMB0426
GCA_002847805.1ScaffoldPKHU00000000
SAMN08193651
UMB0112
GCA_002871775.1ScaffoldPNHJ00000000
SAMN07511396
UMB1094
GCA_002847785.1ScaffoldPKHS00000000
SAMN08193653
UMB0042
GCA_002861405.1ScaffoldPKHT00000000
SAMN08193652
UMB0338
GCA_002861385.1ContigPKHR00000000
SAMN08193654
UMB0043
GCA_002871735.1ScaffoldPNHI00000000
SAMN07511397
UMB1300
GCA_002861365.1ScaffoldPKHQ00000000
SAMN08193655
UMB0147
GCA_002861345.1ContigPKHP00000000
SAMN08193656
UMB0989
GCA_002871755.1ScaffoldPNHH00000000
SAMN07511398
UMB0869
GCA_002847965.1ScaffoldPKHO00000000
SAMN08193657
UMB0763
GCA_002861325.1ScaffoldPKHN00000000
SAMN08193658
UMB0243
GCA_002884935.1ScaffoldPNHG00000000
SAMN07511399
UMB0792
GCA_002871715.1ScaffoldPNHF00000000
SAMN07511400
UMB0908
GCA_002861085.1ContigPKIU00000000
SAMN08193711
UMB0211
GCA_002847685.1ScaffoldPKHM00000000
SAMN08193659
UMB0490
GCA_002871385.1ScaffoldPNFY00000000
SAMN07511402
UMB0860
GCA_002871685.1ScaffoldPNHE00000000
SAMN07511401
UMB0852
GCA_002860705.1ScaffoldPKHV00000000
SAMN08193737
UMB0819
GCA_002848105.1ScaffoldPKJW00000000
SAMN08193702
UMB0660
GCA_002861295.1ScaffoldPKHL00000000
SAMN08193660
UMB0891
GCA_002861285.1ContigPKHK00000000
SAMN08193661
UMB0048
GCA_001657975.1ScaffoldLXGO00000000
SAMN04622672
E75
GCA_001652805.1ScaffoldLXQH00000000SAMN04622947
E-78
GCA_002861265.1ScaffoldPKHJ00000000
SAMN08193662
UMB0789
GCA_002861245.1ContigPKHI00000000
SAMN08193663
UMB0900
GCA_002861225.1ContigPKHH00000000
SAMN08193664
UMB0901
GCA_002861205.1ScaffoldPKHG00000000
SAMN08193665
UMB0727
GCA_003885095.1Scaffold
SAMN10411421
UMB3643
GCA_003885035.1Contig
SAMN09665228
UMB6890
GCA_003885055.1Scaffold
SAMN10411422
UMB1221
GCA_003885245.1Contig
SAMN09665215
UMB6454
GCA_003885255.1Contig
SAMN09665225
UMB6655
GCA_003885305.1Contig
SAMN09665221
UMB3641
GCA_003885295.1Contig
SAMN09665218
UMB0939
GCA_003885225.1Scaffold
SAMN09665229
UMB7431
GCA_003885125.1Scaffold
SAMN09665227
UMB6721
GCA_003885215.1Contig
SAMN09665219
UMB1093
GCA_003885195.1Contig
SAMN09665220
UMB1161
GCA_003885155.1Contig
SAMN09665224
UMB6471
GCA_003885145.1Contig
SAMN09665226
UMB6713
GCA_003886655.1Contig
SAMN09665187
UMB1228
GCA_003885875.1Contig
SAMN09665216
UMB6611
GCA_003886735.1Contig
SAMN09665186
UMB1225
GCA_003886695.1Contig
SAMN09665169
UMB0906
GCA_003886675.1Contig
SAMN09665173
UMB0933
GCA_003886635.1Contig
SAMN09665190
UMB1285
GCA_003886565.1Contig
SAMN09665200
UMB1360
GCA_003886615.1Contig
SAMN09665191
UMB1335
GCA_003886535.1Contig
SAMN09665208
UMB3538
GCA_003886555.1Contig
SAMN09665206
UMB2321
GCA_003886545.1Contig
SAMN09665207
UMB2328
GCA_003886515.1Contig
SAMN09665209
UMB4656
GCA_003886435.1Contig
SAMN09665182
UMB1195
GCA_003886445.1Contig
SAMN09665177
UMB1091
GCA_003886495.1Contig
SAMN09665172
UMB0931
GCA_003886345.1Contig
SAMN09665188
UMB1229
GCA_003886385.1Contig
SAMN09665184
UMB1220
GCA_003886325.1Contig
SAMN09665192
UMB1337
GCA_003886375.1Contig
SAMN09665185
UMB1223
GCA_003886395.1Contig
SAMN09665183
UMB1202
GCA_003886195.1Contig
SAMN09665198
UMB1358
GCA_003886285.1Contig
SAMN09665194
UMB1347
GCA_003886175.1Contig
SAMN09665201
UMB1362
GCA_003886275.1Contig
SAMN09665195
UMB1348
GCA_003886185.1Contig
SAMN09665199
UMB1359
GCA_003886225.1Contig
SAMN09665196
UMB1354
GCA_003886245.1Contig
SAMN09665197
UMB1356
GCA_003886295.1Contig
SAMN09665193
UMB1346
GCA_003886135.1Contig
SAMN09665203
UMB1727
GCA_003886115.1Contig
SAMN09665204
UMB2019
GCA_003885995.1Contig
SAMN09665222
UMB4716
GCA_003886095.1Contig
SAMN09665205
UMB2055
GCA_003886045.1Contig
SAMN09665210
UMB4746
GCA_003885965.1Scaffold
SAMN09665217
UMB6653
GCA_003885915.1Contig
SAMN09665214
UMB5978
GCA_003886035.1Contig
SAMN09665211
UMB5337
GCA_003886105.1Contig
SAMN09665202
UMB1526
GCA_003886015.1Contig
SAMN09665212
UMB5814
GCA_003886005.1Contig
SAMN09665213
UMB5924
GCA_003892555.1Contig
SAMN09665165
UMB0149
GCA_003892605.1Contig
SAMN09665178
UMB1160
GCA_003892645.1Contig
SAMN09665164
UMB0103
GCA_003892635.1Contig
SAMN09665170
UMB0923
GCA_003892595.1Contig
SAMN09665181
UMB1193
GCA_003892535.1Contig
SAMN09665167
UMB0527
GCA_003892485.1Contig
SAMN09665168
UMB0731
GCA_003892375.1Contig
SAMN09665180
UMB1180
GCA_003892545.1Contig
SAMN09665166
UMB0276
GCA_003892445.1Contig
SAMN09665171
UMB0928
GCA_003892435.1Contig
SAMN09665175
UMB0949
GCA_003892475.1Contig
SAMN09665174
UMB0934
GCA_003892455.1Contig
SAMN09665179
UMB1162
GCA_003892355.1Contig
SAMN09665189
UMB1284
GCA_003886455.1Contig
SAMN09665176
UMB1012
GCA_002861185.1ScaffoldPKHF00000000
SAMN08193666
UMB0111
GCA_002847645.1ScaffoldPKHE00000000
SAMN08193667
UMB0898
GCA_002871675.1ScaffoldPNHD00000000
SAMN07511404
UMB0115
GCA_002884895.1ScaffoldPNHC00000000
SAMN07511405
UMB0249
GCA_001660745.1ScaffoldLWSR00000000
SAMN04625631
26-12
GCA_001641215.1ScaffoldLXJL00000000
SAMN04625622
30-4
GCA_002884875.1ScaffoldPNHA00000000
SAMN07511407
UMB0264
GCA_002884855.1ScaffoldPNHB00000000
SAMN07511406
UMB0170
GCA_002884835.1ContigPNGZ00000000
SAMN07511408
UMB0768
GCA_002884795.1ContigPNGW00000000
SAMN07511411
UMB1642
GCA_002884775.1ScaffoldPNGV00000000
SAMN07511412
UMB1686
GCA_002871555.1ScaffoldPNGN00000000
SAMN07511421
UMB0388
GCA_002861165.1ScaffoldPKHD00000000
SAMN08193668
UMB0061
GCA_002861145.1ScaffoldPKHB00000000
SAMN08193670
UMB0913
GCA_002861125.1ScaffoldPKHC00000000
SAMN08193669
UMB0912
GCA_002862065.1ContigPKJN00000000
SAMN08193671
UMB0682
GCA_002862045.1ContigPKJM00000000
SAMN08193672
UMB0233
GCA_002862015.1ScaffoldPKJL00000000
SAMN08193673
UMB0032A
GCA_002862005.1ScaffoldPKJJ00000000
SAMN08193675
UMB0032B
GCA_002861975.1ScaffoldPKJI00000000
SAMN08193676
UMB0298
GCA_002861965.1ScaffoldPKJK00000000
SAMN08193674
UMB0386
GCA_002861945.1ScaffoldPKJH00000000
SAMN08193677
UMB0770
GCA_002861925.1ContigPKJG00000000
SAMN08193678
UMB0775
GCA_002861905.1ScaffoldPKJF00000000
SAMN08193679
UMB0830
GCA_002861885.1ScaffoldPKJE00000000
SAMN08193680
UMB0833
GCA_001660735.1ScaffoldLWSQ00000000
SAMN04625558
23-12
GCA_001660755.1ScaffoldLWSP00000000
SAMN04625602
18-4
GCA_002871615.1ScaffoldPNGT00000000
SAMN07511414
UMB0186
GCA_002847845.1ScaffoldPKJD00000000
SAMN08193682
UMB0514
GCA_002847865.1ScaffoldPKJC00000000
SAMN08193683
UMB0777
GCA_002884755.1ScaffoldPNGS00000000
SAMN07511415
UMB0748
GCA_002871375.1ScaffoldPNFX00000000
SAMN07511403
UMB0295
GCA_002861845.1ScaffoldPKJB00000000
SAMN08193684
UMB0140
GCA_002861865.1ScaffoldPKJA00000000
SAMN08193685
UMB0131
GCA_002847825.1ScaffoldPKIZ00000000
SAMN08193686
UMB1298
GCA_002861815.1ScaffoldPKIW00000000
SAMN08193689
UMB0085
GCA_002861805.1ContigPKIV00000000
SAMN08193690
UMB0824
GCA_002861765.1ScaffoldPKIY00000000
SAMN08193687
UMB0803
GCA_002861775.1ScaffoldPKIX00000000
SAMN08193688
UMB0044
GCA_002863245.1ScaffoldPKKH00000000
SAMN08193691
UMB0040
GCA_002863505.1ScaffoldPKKG00000000
SAMN08193692
UMB1398
GCA_002863485.1ScaffoldPKKF00000000
SAMN08193693
UMB0054
GCA_001700485.1ScaffoldMAMR00000000
SAMN05244207
OAB24-B
GCA_001700475.1ScaffoldMAKH00000000
SAMN05244202
C037
GCA_002847905.1ScaffoldPKKE00000000
SAMN08193694
UMB0003
GCA_002863265.1ScaffoldPKKD00000000
SAMN08193695
UMB0187
GCA_002940965.1ContigPNFW00000000
SAMN07580855
UMB0045b
GCA_002884735.1ContigPNGR00000000
SAMN07511417
UMB0056
GCA_002863455.1ContigPKKC00000000
SAMN08193696
UMB0099
GCA_002863445.1ScaffoldPKKB00000000
SAMN08193697
UMB0670
GCA_002863425.1ContigPKKA00000000
SAMN08193698
UMB0045
GCA_002871595.1ScaffoldPNGP00000000
SAMN07511419
UMB0033
GCA_002884705.1ContigPNGQ00000000
SAMN07511418
UMB0030
GCA_002884695.1ScaffoldPNGO00000000
SAMN07511420
UMB1051
GCA_002863405.1ScaffoldPKJZ00000000
SAMN08193699
UMB0007
GCA_002848045.1ScaffoldPKJY00000000
SAMN08193700
UMB0077
GCA_002940945.1ContigPNFV00000000
SAMN07580856
UMB0683
GCA_002848015.1ScaffoldPKJX00000000
SAMN08193701
UMB0004
GCA_002871415.1ScaffoldPNFU00000000
SAMN07511422
UMB0228
GCA_002884675.1ScaffoldPNGM00000000
SAMN07511423
UMB0189
GCA_002863365.1ContigPKJU00000000
SAMN08193704
UMB0031
GCA_002863375.1ScaffoldPKJV00000000
SAMN08193703
UMB0867
GCA_002863345.1ContigPKJT00000000
SAMN08193705
UMB0038
GCA_002871575.1ScaffoldPNGL00000000
SAMN07511424
UMB0955
GCA_002863315.1ScaffoldPKJS00000000
SAMN08193706
UMB0416
GCA_002847885.1ScaffoldPKJR00000000
SAMN08193707
UMB1297
GCA_002847985.1ScaffoldPKJP00000000
SAMN08193709
UMB0210
GCA_002863305.1ScaffoldPKJQ00000000
SAMN08193708
UMB0023
GCA_002863285.1ScaffoldPKJO00000000
SAMN08193710
UMB0321
GCA_001696685.1ScaffoldMBFG00000000
SAMN05371532
LUREC
GCA_002871345.1ScaffoldPNFT00000000
SAMN07511425
UMB0959
GCA_002884655.1ScaffoldPNGK00000000
SAMN07511426
UMB0345
GCA_002871635.1ScaffoldPNGY00000000
SAMN07511409
UMB0411
GCA_002884815.1ScaffoldPNGX00000000
SAMN07511410
UMB0663
GCA_002884635.1ScaffoldPNGJ00000000
SAMN07511427
UMB0536
GCA_002871515.1ScaffoldPNGI00000000
SAMN07511428
UMB0818
GCA_002861105.1ContigPKIT00000000
SAMN08193712
UMB0315
GCA_002871855.1ScaffoldPNHO00000000
SAMN07511389
UMB0715
GCA_002847605.1ScaffoldPKGR00000000
SAMN08193645
UMB0722
GCA_002861065.1ScaffoldPKIS00000000
SAMN08193713
UMB0740
GCA_002861025.1ContigPKIR00000000
SAMN08193714
UMB0083
GCA_002861015.1ScaffoldPKIQ00000000
SAMN08193715
UMB0024
GCA_002847525.1ScaffoldPKKM00000000
SAMN08193632
UMB0018
GCA_002847545.1ScaffoldPKKJ00000000
SAMN08193635
UMB0250
GCA_002884555.1ContigPNGH00000000
SAMN07511429
UMB0910
GCA_002860985.1ScaffoldPKIP00000000
SAMN08193716
UMB0272
GCA_002884615.1ScaffoldPNGG00000000
SAMN07511431
UMB0834
GCA_002940975.1ContigPNFS00000000
SAMN07511430
UMB0328
GCA_002861005.1ScaffoldPKIO00000000
SAMN08193718
UMB0767
GCA_002871535.1ContigPNGF00000000
SAMN07511432
UMB0776
GCA_002871335.1ScaffoldPNFR00000000
SAMN07580857
UMB0767b
GCA_002884585.1ContigPNGE00000000
SAMN07511433
UMB0049
GCA_002860965.1ScaffoldPKIN00000000
SAMN08193719
UMB0252
GCA_002860945.1ScaffoldPKIM00000000
SAMN08193720
UMB0839
GCA_002860925.1ScaffoldPKIL00000000
SAMN08193721
UMB0820
GCA_002847945.1ScaffoldPKIK00000000
SAMN08193722
UMB0329
GCA_002848125.1ScaffoldPKII00000000
SAMN08193724
UMB0050
GCA_002848085.1ScaffoldPKIH00000000
SAMN08193725
UMB0142
GCA_002848065.1ScaffoldPKIJ00000000
SAMN08193723
UMB0220
GCA_002860805.1ContigPKIB00000000
SAMN08193731
UMB0733
GCA_002860825.1ContigPKID00000000
SAMN08193729
UMB0079
GCA_002860865.1ScaffoldPKIE00000000
SAMN08193728
UMB1341
GCA_002860905.1ScaffoldPKIG00000000
SAMN08193726
UMB0832
GCA_002860885.1ContigPKIF00000000
SAMN08193727
UMB0008
GCA_002871315.1ScaffoldPNFQ00000000
SAMN07580858
UMB0079b
GCA_002860845.1ContigPKIC00000000
SAMN08193730
UMB0216
GCA_002860785.1ScaffoldPKIA00000000
SAMN08193732
UMB0051
GCA_002860765.1ScaffoldPKHZ00000000
SAMN08193733
UMB0028
GCA_002871495.1ScaffoldPNGD00000000
SAMN07511435
UMB0029
GCA_002871655.1ScaffoldPNGU00000000
SAMN07511413
UMB1385
GCA_002860745.1ContigPKHY00000000
SAMN08193734
UMB0116
GCA_002871455.1ScaffoldPNGC00000000
SAMN07511436
UMB0744
GCA_002848005.1ScaffoldPKHX00000000
SAMN08193735
UMB0796
GCA_002847925.1ScaffoldPKHW00000000
SAMN08193736
UMB0371
SRA Data Details
ParameterValue
Data volume, Gbases95
Data volume, Mbytes53890

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