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Accession: PRJNA308224 ID: 308224

Cyprinodon variegatus isolate:N-32 (sheepshead minnow)

Cyprinodon variegatus isolate:N-32 RefSeq Genome sequencing

See Genome Information for Cyprinodon variegatus
The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA89149). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
AccessionPRJNA308224
Data TypeRefSeq Genome sequencing
ScopeMonoisolate
OrganismCyprinodon variegatus[Taxonomy ID: 28743]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon; Cyprinodon variegatus
Publications
  • Brix KV et al., "Comparative evaluation of Na(+) uptake in Cyprinodon variegatus variegatus (Lacepede) and Cyprinodon variegatus hubbsi (Carr) (Cyprinodontiformes, Teleostei): Evaluation of NHE function in high and low Na(+) freshwater.", Comp Biochem Physiol A Mol Integr Physiol, 2015 Jul;185:115-24
  • Lowe TM et al., "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.", Nucleic Acids Res, 1997 Mar 1;25(5):955-64
Grants
  • "Whole genome assembly resources for aquatic models of human disease" (Grant ID 8 R24 OD011198-02, National Center for Research Resources)
SubmissionRegistration date: 17-Jul-2014
Aquatic Genome Models
- Washington University School of Medicine
- Washington University School of Medince
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)47135
Transcript37877
Protein Sequences36511
Publications
PubMed2
PMC1
Other datasets
BioSample1
Assembly1
Related GenBank Project
PRJNA89149 : Cyprinodon variegatus isolate:N-32 Genome sequencing and assembly

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