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Accession: PRJNA305922 ID: 305922

Mycobacterium

Sequence and Analysis of Non-tuberculous Mycobacteria (NTM) strains

The objective of the proposed analysis is to characterize NTM strains representing geographically diverse TB-endemic areas with high NTM prevalence. More...
AccessionPRJNA305922
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • U19AI110819, NIAID
SubmissionRegistration date: 14-Dec-2015
JCVI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)41730
WGS master201
SRA Experiments365
Protein Sequences1033265
Other datasets
BioSample206
Assembly201
Assembly details:
Assembly levelNumber of Assemblies
201
201
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001665955.1ContigLZMN00000000SAMN04696134
EPI-003-04-2554_SCH2473622
GCA_001665715.1ContigLZMO00000000SAMN04696137
852002-10350_SCH5691597
GCA_001665905.1ContigLZTC00000000SAMN04696146
852002-50395_SCH5434458
GCA_001665745.1ContigLZTD00000000SAMN04696147
852002-50816_SCH5313054-a
GCA_001665925.1ContigLZTE00000000SAMN04696149
852002-50816_SCH5313054-c
GCA_001665475.1ContigLZMI00000000SAMN04692014
852002-51296_SCH5728562-b
GCA_001665945.1ContigLZMM00000000SAMN04634266
ICS0012
GCA_001665255.1ContigLZSH00000000SAMN04634200
1482268.1
GCA_001666815.1ContigLZIT00000000SAMN04634210
E2978
GCA_001672935.1ContigLZKT00000000SAMN04634198
1137317.9
GCA_001672925.1ContigLZKS00000000SAMN04634199
1137369.8
GCA_001673365.1ContigLZLS00000000SAMN04634167
1165133.8
GCA_001673345.1ContigLZLR00000000SAMN04634168
1245335.1
GCA_001673315.1ContigLZLQ00000000SAMN04634169
1245139.5
GCA_001673165.1ContigLZLF00000000SAMN05202163
1337463.1
GCA_001673635.1ContigLZMH00000000SAMN04634183
1275241.6
GCA_001668675.1ContigLZKQ00000000SAMN05202170
1081914.2
GCA_001669345.1ContigLZLM00000000SAMN04634178
1276495.2
GCA_001953985.1ContigMBEI00000000SAMN04634270
NS-7390
GCA_001954115.1ContigMBEP00000000SAMN04634277
IS-576
GCA_001954075.1ContigMBEO00000000SAMN04634276
IS-2214
GCA_001954055.1ContigMBEN00000000SAMN04634275
IS-1176
GCA_001673505.1ContigLZMA00000000SAMN04634191
1137323.0
GCA_001673195.1ContigLZLH00000000SAMN04634160
1245197.5
GCA_001673175.1ContigLZLG00000000SAMN04634161
1164983.0
GCA_001673085.1ContigLZLA00000000SAMN04634153
1165916.7
GCA_001673075.1ContigLZKZ00000000SAMN04634154
1245829.5
GCA_001673015.1ContigLZKX00000000SAMN05202162
1245759.5
GCA_001673005.1ContigLZKW00000000SAMN04634156
1211504.4
GCA_001672755.1ContigLZKI00000000SAMN04634246
E1334
GCA_001667905.1ContigLZJS00000000SAMN04634223
E2464
GCA_001665835.1ContigLZSX00000000SAMN04691980
852002-51834_SCH5396731
GCA_001673255.1ContigLZLK00000000SAMN05202166
1245695.6
GCA_001673475.1ContigLZLX00000000SAMN04634194
1275229.4
GCA_001675225.1ContigMAEM00000000SAMN05202167
1245752.6
GCA_001953995.1ContigMBEL00000000SAMN04634273
NS-7503
GCA_001673575.1ContigLZME00000000SAMN04634187
1211594.5
GCA_001673105.1ContigLZLB00000000SAMN04634164
1245976.6
GCA_001666995.1ContigLZIU00000000SAMN04634209
E2853
GCA_001672655.1ContigLZKB00000000SAMN04634253
E2548
GCA_001667355.1ContigLZIO00000000SAMN04692027
852002-53206_SCH5915646
GCA_001667655.1ContigLZJO00000000SAMN04634228
E3191
GCA_001667705.1ContigLZJT00000000SAMN04634222
E2190
GCA_001686655.1ContigMBDX00000000SAMN04634182
1099801.4
GCA_001686645.1ContigMBDZ00000000SAMN04634227
E3170
GCA_001667525.1ContigLZHY00000000SAMN04634263
ACS1160
GCA_001673455.1ContigLZLW00000000SAMN04634195
1146974.2
GCA_001672775.1ContigLZKJ00000000SAMN04634245
E861
GCA_001499925.1ContigLQIR00000000SAMN04349498
IS-1744
GCA_001686825.1ContigMBEC00000000SAMN04634213
E896
GCA_001686745.1ContigMBEE00000000SAMN04634215
E3012
GCA_001686725.1ContigMBEB00000000SAMN05202171
E826
GCA_001686735.1ContigMBED00000000SAMN04634214
E1298
GCA_001686665.1ContigMBEA00000000SAMN04634212
E614
GCA_001667695.1ContigLZJU00000000SAMN04634221
E152
GCA_001667865.1ContigLZJP00000000SAMN04634226
E3121
GCA_001667835.1ContigLZJV00000000SAMN04634220
E3078
GCA_001667995.1ContigLZJQ00000000SAMN04634225
E2660
GCA_001673235.1ContigLZLI00000000SAMN04634159
1165549.7
GCA_001686675.1ContigMBDY00000000SAMN04634255
ACS3670
GCA_001667885.1ContigLZJW00000000SAMN04634219
E3039
GCA_001672575.1ContigLZJY00000000SAMN04634217
E2838
GCA_001673535.1ContigLZLY00000000SAMN04634193
1081908.1
GCA_001665235.1ContigLZSC00000000SAMN04634185
1100029.7
GCA_001665395.1ContigLZSG00000000SAMN05202168
1164966.3
GCA_001668575.1ContigLZMD00000000SAMN04634188
1164985.4
GCA_001673555.1ContigLZMB00000000SAMN04634190
1165178.9
GCA_001673415.1ContigLZLU00000000SAMN04634197
1165196.3
GCA_001673405.1ContigLZLV00000000SAMN04634196
1245111.1
GCA_001673615.1ContigLZMG00000000SAMN04634184
1245499
GCA_001673055.1ContigLZKY00000000SAMN04634155
1245801.1
GCA_001672915.1ContigLZKR00000000SAMN05202169
1245805.9
GCA_001669335.1ContigLZLL00000000SAMN05202165
1245852.3
GCA_001668625.1ContigLZLJ00000000SAMN04634181
1274756.6
GCA_001668615.1ContigLZMC00000000SAMN04634189
1274761
GCA_001673155.1ContigLZLE00000000SAMN05202164
1423905.2
GCA_001672975.1ContigLZKU00000000SAMN04634158
1465703
GCA_001672995.1ContigLZKV00000000SAMN04634157
1482292.6
GCA_001665295.1ContigLZSE00000000SAMN04634179
1554424.7
GCA_001667315.1ContigLZHT00000000SAMN04696135
852002-10029_SCH5224772
GCA_001665645.1ContigLZSZ00000000SAMN04696142
852002-30065_SCH5024008
GCA_001665875.1ContigLZTA00000000SAMN04696143
852002-40037_SCH5390672
GCA_001667185.1ContigLZIC00000000SAMN04696148
852002-50816_SCH5313054-b
GCA_001667035.1ContigLZIR00000000SAMN04692007
852002-51057_SCH5723018
GCA_001667105.1ContigLZIK00000000SAMN04696151
852002-51152_SCH6134967
GCA_001667115.1ContigLZIJ00000000SAMN04696152
852002-51163_SCH5372311
GCA_001667425.1ContigLZII00000000SAMN04691946
852002-51613_SCH5001154
GCA_001667455.1ContigLZIG00000000SAMN05202175
852002-51759_SCH5129042
GCA_001665535.1ContigLZSQ00000000SAMN04691954
852002-51961_SCH5331710
GCA_001667145.1ContigLZIF00000000SAMN04691956
852002-51971_SCH5477799-a
GCA_001667155.1ContigLZIE00000000SAMN04691965
852002-53434_SCH5985345
GCA_001665685.1ContigLZTB00000000SAMN04696145
852013-50091_SCH5140682
GCA_001665575.1ContigLZSU00000000SAMN04691969
852013-51886_SCH5428379
GCA_001665605.1ContigLZSV00000000SAMN04691973
852014-50255_SCH5639931
GCA_001665615.1ContigLZSW00000000SAMN04691977
852014-52144_SCH5372336
GCA_001667075.1ContigLZIL00000000SAMN04692044
852014-52450_SCH5900713
GCA_001667505.1ContigLZHZ00000000SAMN04634262
ACS1612
GCA_001667275.1ContigLZHV00000000SAMN04634268
ACS4054
GCA_001667265.1ContigLZHW00000000SAMN04634265
ACS4331
GCA_001666755.1ContigLZJC00000000SAMN04634238
E1214
GCA_001667745.1ContigLZJL00000000SAMN04634231
E1319
GCA_001666865.1ContigLZJE00000000SAMN04634236
E136
GCA_001672745.1ContigLZKH00000000SAMN04634247
E1386
GCA_001667625.1ContigLZJJ00000000SAMN05202172
E1715
GCA_001667775.1ContigLZJI00000000SAMN04634233
E1747
GCA_001667735.1ContigLZJN00000000SAMN04634229
E183
GCA_001666935.1ContigLZIY00000000SAMN04634241
E188
GCA_001672665.1ContigLZKF00000000SAMN04634249
E2238
GCA_001672675.1ContigLZKE00000000SAMN04634250
E2327
GCA_001672685.1ContigLZKC00000000SAMN04634252
E2462
GCA_001667925.1ContigLZJR00000000SAMN04634224
E2479
GCA_001668695.1ContigLZKD00000000SAMN04634251
E2497
GCA_001666745.1ContigLZJH00000000SAMN04634234
E2699
GCA_001667585.1ContigLZJZ00000000SAMN04634216
E2733
GCA_001667595.1ContigLZJX00000000SAMN04634218
E2989
GCA_001667015.1ContigLZIS00000000SAMN04634211
E3198
GCA_001667785.1ContigLZJG00000000SAMN05202173
E3247
GCA_001666835.1ContigLZJF00000000SAMN04634235
E3251
GCA_001666895.1ContigLZJB00000000SAMN05202174
E3298
GCA_001666785.1ContigLZJA00000000SAMN04634239
E3305
GCA_001666915.1ContigLZIZ00000000SAMN04634240
E3339
GCA_001667665.1ContigLZJM00000000SAMN04634230
E342
GCA_001666955.1ContigLZIX00000000SAMN04634242
E735
GCA_001672895.1ContigLZKP00000000SAMN04634201
E740
GCA_001668725.1ContigLZKL00000000SAMN04634243
E787
GCA_001672815.1ContigLZKK00000000SAMN04634244
E796
GCA_001666875.1ContigLZJD00000000SAMN04634237
E802
GCA_001499855.1ContigLQIK00000000SAMN04349491
GA-0227b
GCA_001500045.1ContigLQIX00000000SAMN04349504
GA-1199
GCA_001499905.1ContigLQIS00000000SAMN04349499
GA-1285
GCA_001954135.1ContigMBEQ00000000SAMN04634278
GA-1841
GCA_001500145.1ContigLQIL00000000SAMN04349492
GA-1999
GCA_001499965.1ContigLQIT00000000SAMN04349500
GA-2829
GCA_001954195.1ContigMBES00000000SAMN04634282
IS-1264
GCA_001499995.1ContigLQIU00000000SAMN04349501
IS-1496
GCA_001499985.1ContigLQIM00000000SAMN04349493
IS-1556
GCA_001500025.1ContigLQIW00000000SAMN04349503
IS-1590
GCA_001500125.1ContigLQIV00000000SAMN04349502
IS-1742
GCA_001954215.1ContigMBET00000000SAMN04634283
IS-2888
GCA_001500065.1ContigLQIN00000000SAMN04349494
IS-3022
GCA_001954275.1ContigMBEU00000000SAMN04634285
IS-836
GCA_001953975.1ContigMBEJ00000000SAMN04634271
NS-7484
GCA_001954045.1ContigMBEM00000000SAMN04634274
SP-6446
GCA_001673125.1ContigLZLD00000000SAMN04634162
1337842.4
GCA_001673395.1ContigLZLT00000000SAMN04634165
1337782.3
GCA_001686835.1ContigMBEG00000000SAMN04634260
ICS2043
GCA_001686845.1ContigMBEH00000000SAMN04634267
ACS4093
GCA_001686755.1ContigMBEF00000000SAMN04634259
ACS5020
GCA_001672735.1ContigLZKG00000000SAMN04634248
E1876
GCA_001673565.1ContigLZMF00000000SAMN04634186
1274684.2
GCA_001667395.1ContigLZIM00000000SAMN04692039
852014-51077_SCH5608930-b
GCA_001667375.1ContigLZIN00000000SAMN04692035
852014-51077_SCH5608930-a
GCA_001667945.1ContigLZJK00000000SAMN04634232
E1572
GCA_001500105.1ContigLQIP00000000SAMN04349496
GA-1379
GCA_001500085.1ContigLQIQ00000000SAMN04349497
GA-1683
GCA_001499915.1ContigLQIO00000000SAMN04349495
GA-1331
GCA_001667065.1ContigLZIQ00000000SAMN04692011
852002-51296_SCH5728562-a
GCA_001954205.1ContigMBGF00000000SAMN04634281
IS-1222
GCA_001954235.1ContigMBGG00000000SAMN04634284
IS-2586
GCA_001954125.1ContigMBGE00000000SAMN04634279
GA-1041
GCA_001667235.1ContigLZHX00000000SAMN04634264
ACS1953
GCA_001667225.1ContigLZIA00000000SAMN04634258
ACS2995
GCA_001667305.1ContigLZHU00000000SAMN04634269
ACS4694
GCA_001667965.1ContigLZKA00000000SAMN04634254
ACS2998
GCA_001665335.1ContigLZSK00000000SAMN04634256
ACS2738
GCA_001673265.1ContigLZLN00000000SAMN04634177
1165613.5
GCA_001665365.1ContigLZSD00000000SAMN04634166
1477680.9
GCA_001665755.1ContigLZSM00000000SAMN04691997
852014-51730_SCH5271717
GCA_001667535.1ContigLZHS00000000SAMN04696136
852002-10318_SCH4845932
GCA_001667445.1ContigLZIH00000000SAMN04691950
852002-51695_SCH5383401
GCA_001667345.1ContigLZIP00000000SAMN04692022
852002-51564_SCH6189132-b
GCA_001666985.1ContigLZIV00000000SAMN04634208
E1141
GCA_001666795.1ContigLZIW00000000SAMN04634207
E190
GCA_001665795.1ContigLZSR00000000SAMN04691959
852002-53395_SCH5661144-a
GCA_001665545.1ContigLZSS00000000SAMN04691961
852002-53395_SCH5661144-b
GCA_001665415.1ContigLZSJ00000000SAMN04634206
E1336
GCA_001665315.1ContigLZSI00000000SAMN04634203
E3377
GCA_001665455.1ContigLZSN00000000SAMN04692001
852014-51789_SCH5646012
GCA_001673275.1ContigLZLO00000000SAMN04634176
1089381.4
GCA_001673325.1ContigLZLP00000000SAMN04634170
1165541.1
GCA_001672855.1ContigLZKM00000000SAMN04634205
E2378
GCA_001672845.1ContigLZKO00000000SAMN04634202
E3337
GCA_001672835.1ContigLZKN00000000SAMN04634204
E2981
GCA_001673485.1ContigLZLZ00000000SAMN04634192
1242461.0
GCA_001954145.1ContigMBER00000000SAMN04634280
GA-0871
GCA_001954035.1ContigMBEK00000000SAMN04634272
NS-7455
GCA_001665825.1ContigLZST00000000SAMN04856196
852013-50142_SCH4511227
GCA_001667465.1ContigLZID00000000SAMN04696138
852002-10379_SCH5584320
GCA_001668705.1ContigLZLC00000000SAMN04634163
1127319.6
GCA_001665375.1ContigLZSF00000000SAMN04634180
1199456.5
GCA_001499835.1ContigLQIH00000000SAMN04339709
GA-2613
GCA_001499845.1ContigLQIJ00000000SAMN04349490
GA-2945b
GCA_001499825.1ContigLQII00000000SAMN04349489
GA-2617
GCA_001665785.1ContigLZSO00000000SAMN04696154
852002-51209_SCH5440388
GCA_001665625.1ContigLZSY00000000SAMN04696139
852002-10433_SCH5171157
GCA_001667205.1ContigLZIB00000000SAMN04634257
ACS819
GCA_001665445.1ContigLZSL00000000SAMN04691993
852014-10208_SCH5295773
GCA_001665865.1ContigLZMK00000000SAMN04696140
852002-20019_SCH5090214
GCA_001665695.1ContigLZML00000000SAMN04696150
852002-51101_SCH5132738
GCA_001665525.1ContigLZSP00000000SAMN04691940
852002-51244_SCH5132740
GCA_001665495.1ContigLZMJ00000000SAMN04692018
852002-51564_SCH6189132-a
SRA Data Details
ParameterValue
Data volume, Gbases245
Data volume, Tbytes0.11

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  • Mycobacterium
    Mycobacterium
    Sequence and Analysis of Non-tuberculous Mycobacteria (NTM) strains
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