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Accession: PRJNA30445 ID: 30445

marine metagenome

Marine Synechococcus metagenome isolated from coastal surface water

Coastal surface water was collected from the end of the pier located at the Scripps Institution of Oceanography, La Jolla, CA on October 10, 2006. More...
AccessionPRJNA30445
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
PublicationsPalenik B et al., "Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity.", Environ Microbiol, 2009 Feb;11(2):349-59
SubmissionRegistration date: 21-Aug-2008
J. Craig Venter Institute
NCBI Links
Locus Tag PrefixSYNEM
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)36
WGS master1
Genomic DNA35
SRA Experiments1
Publications
PubMed1
Other datasets
BioSample1
PopSet1
Assembly1
Assembly details:
AssemblyLevelWGSBioSampleTaxonomy
GCA_000206025.1ContigABVN00000000SAMN00000302
marine metagenome
SRA Data Details
ParameterValue
Data volume, Mbases40
Data volume, Mbytes101

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LinkOut to external resources

  • GOLD: Gp0060400 [Genomes On Line Database]
    GOLD: Gp0060400
    Genomes On Line Database

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