See
Genome Information for Arabidopsis thaliana
To understand an effect of an ONSEN insertion for a gene network, a genome wide gene expression on the ONSEN inserted lines was analyzed by a microarray. The microarray analysis identified 6,520 and 7,262 significant different expressed genes (3/2 fold or 2/3 fold, FDR < 0.05) in 13-7 and 19-4 respectively under ABA stress.
Overall design: Two of ONSEN inserted lines (13-7, 19-4), parent line (nrpd1), and wild-type plants (Arabidopsis thaliana ecotype Columbia) were grown on MS medium with and without 2μM ABA for 7 days. Total RNA was extructed from the plants, using TRI Reagent (Sigma T9424). 100 ng of the isolated tatal RNAs were used for the expresion profiling using the custom array.
| Accession | PRJNA292558; GEO: GSE71951 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Arabidopsis thaliana[Taxonomy ID: 3702] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana |
| Publications | Ito H et al., "A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity.", Sci Rep, 2016 Mar 15;6:23181 |
| Submission | Registration date: 11-Aug-2015
Plant Genomic Network Research Team, Center for Sustainable Resource Science, RIKEN |
| NCBI Links | |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 1263408 |
| Data volume, Processed Mbytes | 21 |
| Data volume, Supplementary Mbytes | 178 |