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Accession: PRJNA292113 ID: 292113

Danio rerio strain:CG2 (zebrafish)

Danio rerio strain:CG2 genome sequencing and assembly

See Genome Information for Danio rerio
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1823 additional projects are related by organism.
Genomic DNA purified from a whole CG2 clonal zebrafish was sequenced using an Illumina HiSeq2500 (yielding 38 Gb of 2 x 100 paired-end reads with approximately 25 x sequence coverage). More...
AccessionPRJNA292113
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismDanio rerio[Taxonomy ID: 7955]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio; Danio rerio
PublicationsMcConnell SC et al., "Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution.", Proc Natl Acad Sci U S A, 2016 Aug 23;113(34):E5014-23
Grants
  • "Uncovering diversity of the vertebrate immune system through genomic sequencing of clonal zebrafish lines" (Grant ID PDR-0260, Chicago Biomedical Consortium)
SubmissionRegistration date: 29-Dec-2015
University of Chicago
RelevanceModel Organism
Locus Tag PrefixAKN86
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1
SRA Experiments1
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSBioSampleTaxonomy
GCA_001483285.1ScaffoldLKPD00000000SAMN03964926
Danio rerio
SRA Data Details
ParameterValue
Data volume, Gbases76
Data volume, Mbytes34989

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