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Accession: PRJNA291632 ID: 291632

Cell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition

See Genome Information for Mus musculus
Epithelial to mesenchymal transition (EMT) in cancer cells has been associated with metastasis, stemness and resistance to therapy. The reason why some tumors undergo EMT and other not might reflect intrinsic properties of their cell of origin, although this possibility is largely unexplored. By targeting the same oncogenic mutations to discrete skin compartments, we show cell type-specific chromatin and transcriptional states differentially prime tumors to EMT. Squamous cell carcinomas (SCCs) derived from intrafollicular epidermis (IFE) are generally well-differentiated, while hair follicle (HF) stem cell-derived SCCs frequently exhibit EMT, efficiently form secondary tumors, and possess increased metastatic potential. Transcriptional and epigenomic profiling revealed IFE and HF tumor-initiating cells possess distinct chromatin landscapes and gene regulatory networks associated with tumorigenesis and EMT that correlate with accessibility of key epithelial and EMT transcription factor binding sites. More...
AccessionPRJNA291632; GEO: GSE71621
TypeUmbrella project
PublicationsLatil M et al., "Cell-Type-Specific Chromatin States Differentially Prime Squamous Cell Carcinoma Tumor-Initiating Cells for Epithelial to Mesenchymal Transition.", Cell Stem Cell, 2017 Feb 2;20(2):191-204.e5
SubmissionRegistration date: 31-Jul-2015
ULB
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Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments14
Publications
PubMed1
PMC1
Other datasets
BioSample14
GEO DataSets5
GEO Data Details
ParameterValue
Data volume, Spots1173586
Data volume, Processed Mbytes27
Data volume, Supplementary Mbytes76
SRA Data Details
ParameterValue
Data volume, Gbases171
Data volume, Tbytes0.11
Cell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Epigenomics1
BioProject
accession
OrganismTitle
PRJNA288786Mus musculusCell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition [ATAC-seq] (ULB)
Transcriptome or Gene expression3
BioProject
accession
OrganismTitle
PRJNA348518Mus musculusCell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition [expression 1] (ULB)
PRJNA348520Mus musculusCell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition [expression 2] (ULB)
PRJNA349479Mus musculusCell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition [RNA-seq] (ULB)

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