Streptococcus pneumoniae (ID 291603) - BioProject

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Accession: PRJNA291603 ID: 291603

Streptococcus pneumoniae

Genomic characterization of Streptococcus pneumoniae 12F outbreak strains

See Genome Information for Streptococcus pneumoniae

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648 additional projects are related by organism.

Whole-genome sequencing was used to study community-associated outbreaks of pneumonia and bacteremia occurred in Manitoba, Canada during 2008-2011 caused by pneumococci 12F-CC218, through comparison with historical US 12F outbreaks and non-outbreak 12F survey strains. The main goal is to track the origin, transmission and evolution of 12F outbreak isolates.

Accession	PRJNA291603
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Streptococcus pneumoniae[Taxonomy ID: 1313] Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
Submission	Registration date: 10-Mar-2016 University of Toronto
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5962
WGS master	66
Protein Sequences	132662
Other datasets
BioSample	66
Assembly	66

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

2
64
66

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001585785.1	LJKS00000000	SAMN03946361	MT9	Streptococcus pneumoniae
GCA_001585765.1	LJKO00000000	SAMN03946357	MT5	Streptococcus pneumoniae
GCA_001585825.1	LJLA00000000	SAMN03946370	MT18	Streptococcus pneumoniae
GCA_001585805.1	LJKX00000000	SAMN03946366	MT14	Streptococcus pneumoniae
GCA_001585855.1	LJLI00000000	SAMN03946379	MT27	Streptococcus pneumoniae
GCA_001585845.1	LJLE00000000	SAMN03946375	MT23	Streptococcus pneumoniae
GCA_001585905.1	LJMU00000000	SAMN03946385	MT33	Streptococcus pneumoniae
GCA_001585885.1	LJLL00000000	SAMN03946382	MT30	Streptococcus pneumoniae
GCA_001585935.1	LJLQ00000000	SAMN03946389	MT37	Streptococcus pneumoniae
GCA_001585925.1	LJLP00000000	SAMN03946388	MT36	Streptococcus pneumoniae
GCA_001585985.1	LJMQ00000000	SAMN03946397	CLG6	Streptococcus pneumoniae
GCA_001585965.1	LJMT00000000	SAMN03946392	CLG1	Streptococcus pneumoniae
GCA_001586015.1	LJMB00000000	SAMN03946407	CA658	Streptococcus pneumoniae
GCA_001586005.1	LJLZ00000000	SAMN03946402	ON177	Streptococcus pneumoniae
GCA_001586065.1	LJMF00000000	SAMN03946412	CA693	Streptococcus pneumoniae
GCA_001586045.1	LJMD00000000	SAMN03946409	MD651	Streptococcus pneumoniae
GCA_001586085.1	LJMH00000000	SAMN03946414	MD670	Streptococcus pneumoniae
GCA_001585145.1	LJLG00000000	SAMN03946377	MT25	Streptococcus pneumoniae
GCA_001585125.1	LJLF00000000	SAMN03946376	MT24	Streptococcus pneumoniae
GCA_001585185.1	LJLJ00000000	SAMN03946380	MT28	Streptococcus pneumoniae
GCA_001585155.1	LJLH00000000	SAMN03946378	MT26	Streptococcus pneumoniae
GCA_001585225.1	LJLM00000000	SAMN03946383	MT31	Streptococcus pneumoniae
GCA_001585205.1	LJLK00000000	SAMN03946381	MT29	Streptococcus pneumoniae
GCA_001585265.1	LJLN00000000	SAMN03946386	MT34	Streptococcus pneumoniae
GCA_001585245.1	LJMV00000000	SAMN03946384	MT32	Streptococcus pneumoniae
GCA_001585305.1	LJLR00000000	SAMN03946390	MT38	Streptococcus pneumoniae
GCA_001585285.1	LJLO00000000	SAMN03946387	MT35	Streptococcus pneumoniae
GCA_001585335.1	LJMS00000000	SAMN03946393	CLG2	Streptococcus pneumoniae
GCA_001585325.1	LJLS00000000	SAMN03946391	MT39	Streptococcus pneumoniae
GCA_001585385.1	LJLU00000000	SAMN03946395	CLG4	Streptococcus pneumoniae
GCA_001585355.1	LJLT00000000	SAMN03946394	CLG3	Streptococcus pneumoniae
GCA_001585425.1	LJLV00000000	SAMN03946398	CLG7	Streptococcus pneumoniae
GCA_001585405.1	LJMR00000000	SAMN03946396	CLG5	Streptococcus pneumoniae
GCA_001585465.1	LJLX00000000	SAMN03946400	CLG9	Streptococcus pneumoniae
GCA_001585435.1	LJLW00000000	SAMN03946399	CLG8	Streptococcus pneumoniae
GCA_001585505.1	LJMP00000000	SAMN03946403	AK133	Streptococcus pneumoniae
GCA_001585485.1	LJLY00000000	SAMN03946401	CLG10	Streptococcus pneumoniae
GCA_001585545.1	LJMA00000000	SAMN03946405	AK135	Streptococcus pneumoniae
GCA_001585515.1	LJMO00000000	SAMN03946404	AK134	Streptococcus pneumoniae
GCA_001585585.1	LJMC00000000	SAMN03946408	MD647	Streptococcus pneumoniae
GCA_001585565.1	LJMN00000000	SAMN03946406	AK136	Streptococcus pneumoniae
GCA_001585625.1	LJMM00000000	SAMN03946411	TX645	Streptococcus pneumoniae
GCA_001585595.1	LJME00000000	SAMN03946410	TX640	Streptococcus pneumoniae
GCA_001585665.1	LJMI00000000	SAMN03946415	CO697	Streptococcus pneumoniae
GCA_001585635.1	LJMG00000000	SAMN03946413	SN2206	Streptococcus pneumoniae
GCA_001585705.1	LJMK00000000	SAMN03946417	FL2255	Streptococcus pneumoniae
GCA_001585675.1	LJMJ00000000	SAMN03946416	ND2232	Streptococcus pneumoniae
GCA_001585745.1	LJKN00000000	SAMN03946355	MT3	Streptococcus pneumoniae
GCA_001585725.1	LJML00000000	SAMN03946418	IOW2286	Streptococcus pneumoniae
GCA_001584805.1	LJMY00000000	SAMN03946356	MT4	Streptococcus pneumoniae
GCA_001584795.1	LJKM00000000	SAMN03946354	MT2	Streptococcus pneumoniae
GCA_001584875.1	LJKR00000000	SAMN03946360	MT8	Streptococcus pneumoniae
GCA_001584815.1	LJKP00000000	SAMN03946358	MT6	Streptococcus pneumoniae
GCA_001584885.1	LJKT00000000	SAMN03946362	MT10	Streptococcus pneumoniae
GCA_001584865.1	LJKQ00000000	SAMN03946359	MT7	Streptococcus pneumoniae
GCA_001584945.1	LJKV00000000	SAMN03946364	MT12	Streptococcus pneumoniae
GCA_001584915.1	LJKU00000000	SAMN03946363	MT11	Streptococcus pneumoniae
GCA_001584975.1	LJKY00000000	SAMN03946367	MT15	Streptococcus pneumoniae
GCA_001584965.1	LJKW00000000	SAMN03946365	MT13	Streptococcus pneumoniae
GCA_001585025.1	LJKZ00000000	SAMN03946369	MT17	Streptococcus pneumoniae
GCA_001584995.1	LJMX00000000	SAMN03946368	MT16	Streptococcus pneumoniae
GCA_001585065.1	LJMW00000000	SAMN03946372	MT20	Streptococcus pneumoniae
GCA_001585045.1	LJLB00000000	SAMN03946371	MT19	Streptococcus pneumoniae
GCA_001585105.1	LJLD00000000	SAMN03946374	MT22	Streptococcus pneumoniae
GCA_001585075.1	LJLC00000000	SAMN03946373	MT21	Streptococcus pneumoniae
GCA_001584785.1	LIAD00000000	SAMN03946353	MT1	Streptococcus pneumoniae

Supplemental Content

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LinkOut to external resources

GOLD Multi-Isolate BioProject - 291603 [Genomes On Line Database]
GOLD Multi-Isolate BioProject - 291603
Genomes On Line Database
2706794400: Streptococcus pneumoniae MT39 [Integrated Microbial Genomes]
2706794400: Streptococcus pneumoniae MT39
Integrated Microbial Genomes
2698536666: Streptococcus pneumoniae MT30 [Integrated Microbial Genomes]
2698536666: Streptococcus pneumoniae MT30
Integrated Microbial Genomes
2698536545: Streptococcus pneumoniae MT7 [Integrated Microbial Genomes]
2698536545: Streptococcus pneumoniae MT7
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
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Genomic characterization of Streptococcus pneumoniae 12F outbreak strains

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