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Accession: PRJNA291542 ID: 291542

Escherichia coli

Whole Genome Sequencing of Clinical Escherichia coli 0157:H7 Isolates from Alberta, Canada

See Genome Information for Escherichia coli
To better understand the applicability of different methods of whole genome sequence analysis to outbreak investigations, E. coli 0157:H7 isolates from three outbreaks occurring in Alberta, Canada were sequenced.
AccessionPRJNA291542
Data TypeGenome sequencing
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsBerenger BM et al., "The utility of multiple molecular methods including whole genome sequencing as tools to differentiate Escherichia coli O157:H7 outbreaks.", Euro Surveill, 2015;20(47)
SubmissionRegistration date: 30-Jul-2015
PulseNet Canada
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments139
Publications
PubMed1
Other datasets
BioSample139
SRA Data Details
ParameterValue
Data volume, Gbases87
Data volume, Mbytes52287

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