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Accession: PRJNA291520 ID: 291520

Arabidopsis thaliana (thale cress)

Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica

See Genome Information for Arabidopsis thaliana
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5934 additional projects are related by organism.
Root-knot nematodes (RKNs) induce inside the vascular cylinder the giant cells (GCs) imbibed into a gall. More...
AccessionPRJNA291520; GEO: GSE71563
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
Publications
  • Verstraeten B et al., "Non-coding RNAs in the interaction between rice and Meloidogyne graminicola.", BMC Genomics, 2021 Jul 20;22(1):560
  • Cabrera J et al., "Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs.", New Phytol, 2016 Mar;209(4):1625-40
SubmissionRegistration date: 30-Jul-2015
UCLM
NCBI Links
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments6
Publications
PubMed2
PMC1
Other datasets
BioSample6
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes81
SRA Data Details
ParameterValue
Data volume, Gbases3
Data volume, Mbytes2084

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