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Accession: PRJNA291519 ID: 291519

Escherichia coli

RNA-Seq of Escherichia coli after anaerobic-aerobic transition

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7503 additional projects are related by organism.
E. coli K12 strain W3110 was used in this study. Cells were grown anaerobically in defined medium at pH7 and 37°C in a stirred 3-liter bioreactor until the culture reached an OD (600nm) of 3. More...
AccessionPRJNA291519; GEO: GSE71562
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications (total 3)
  • Bui TT et al., "Attractor Concepts to Evaluate the Transcriptome-wide Dynamics Guiding Anaerobic to Aerobic State Transition in Escherichia coli.", Sci Rep, 2020 Apr 3;10(1):5878
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SubmissionRegistration date: 30-Jul-2015
Institute for System Dynamics, University of Stuttgart
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments18
Publications
PubMed3
PMC3
Other datasets
BioSample18
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases9
Data volume, Mbytes5829

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