See
Genome Information for Arabidopsis thaliana
We profiled transcriptome of seedling samples derived from SALK Col-0 plants and a Col-0 plants reproduced in our lab for at least 10 generations. Using strand-specific RNA-seq analysis, we identified 32 genes were differentially expressed genes (fold-change > 2, DESeq2 P-value < 0.01), including 28 ones (88%) were up-regulated in the Col-0 plants reproduced in our lab. Of them, QUA-QUINE STARCH (QQS) ranked top 2 differentially expressed gene.
Overall design: 2 lines with 2 biological replicates
| Accession | PRJNA290325; GEO: GSE71085 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Arabidopsis thaliana[Taxonomy ID: 3702] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana |
| Submission | Registration date: 20-Jul-2015
Jun Liu lab, Chinese Academy of Agricultural Sciences, Institute of Crop Science |
| NCBI Links | |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 4 |
| Other datasets |
| BioSample | 4 |
| GEO DataSets | 1 |