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Accession: PRJNA290197 ID: 290197

marine sediment metagenome

Methane Seep Sediments Metagenomic assembly

Multiple metagenomes were sequenced from sediments collected from Hydrate Ridge methane seeps. More...
AccessionPRJNA290197
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine sediment metagenome[Taxonomy ID: 412755]
unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
PublicationsKauffman KM et al., "A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria.", Nature, 2018 Feb 1;554(7690):118-122
SubmissionRegistration date: 10-Aug-2015
California Institute of Technology
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7553
WGS master21
SRA Experiments3
Protein Sequences38264
Publications
PubMed1
Other datasets
BioSample20
Assembly21
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
15
6
21
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_002926195.1ScaffoldMZXQ00000000SAMN06562579
HR1
ANME-2 cluster archaeon HR1
GCA_001751085.1ScaffoldMAXP00000000SAMN05301630
C00003060
Desulfobacterales bacterium C00003060
GCA_001750905.1ScaffoldMANV00000000SAMN05263723
C00003104
Desulfobacterales bacterium C00003104
GCA_001751015.1ScaffoldMAXM00000000SAMN05301625
C00003106
Desulfobacterales bacterium C00003106
GCA_001750945.1ContigMAXG00000000SAMN05301618
S3730MH5
Desulfobacterales bacterium S3730MH5
GCA_001751005.1ContigMAXL00000000SAMN05301624
S5133MH16
Desulfobacterales bacterium S5133MH16
GCA_001750985.1ContigMAXJ00000000SAMN05301622
S5133MH4
Desulfobacterales bacterium S5133MH4
GCA_001751145.1ScaffoldMAXQ00000000SAMN05301631
C00003063
Desulfobulbaceae bacterium C00003063
GCA_001750925.1ContigMAXH00000000SAMN05301619
S3730MH12
Desulfobulbaceae bacterium S3730MH12
GCA_001750995.1ContigMAXK00000000SAMN05301623
S5133MH15
Desulfobulbaceae bacterium S5133MH15
GCA_001750915.1ContigMAXI00000000SAMN05301620
S3730MH75
Desulfovibrio sp. S3730MH75
GCA_001751155.1ScaffoldMAXR00000000SAMN05301632
C00003068
Desulfuromonadales bacterium C00003068
GCA_001751205.1ScaffoldMAXS00000000SAMN05301621
C00003093
Desulfuromonadales bacterium C00003093
GCA_001751065.1ScaffoldMAXN00000000SAMN05301628
C00003094
Desulfuromonadales bacterium C00003094
GCA_001751115.2ScaffoldMAXO00000000SAMN05301629
C00003096
Desulfuromonadales bacterium C00003096
GCA_001751225.1ScaffoldMAXT00000000SAMN05301626
C00003107
Desulfuromonadales bacterium C00003107
GCA_001263475.1ScaffoldLGVD00000000SAMN03857201
-
marine sediment metagenome
GCA_001263455.1ScaffoldLGVC00000000SAMN03857202
-
marine sediment metagenome
GCA_001263485.1ScaffoldLGVF00000000SAMN03893561
-
marine sediment metagenome
GCA_001263535.1ScaffoldLGOV00000000SAMN03857199
-
marine sediment metagenome
GCA_001263465.1ScaffoldLGVE00000000SAMN03893561
-
marine sediment metagenome
SRA Data Details
ParameterValue
Data volume, Gbases201
Data volume, Tbytes0.13

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