ID 290141 - BioProject

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Accession: PRJNA290141 ID: 290141

Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly

genome comparison of beer-spoiling and non-spoiling strains

Accession	PRJNA290141
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Behr J et al., "The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr.", PLoS One, 2016;11(3):e0152747
Grants	"Speziesübergreifende Identifizierung bierverderbender Bakterien der Gattungen Lactobacillus und Pediococcus anhand von Lifestyle Genen" (Grant ID AiF 17576, German Ministry of Economics and Technology via AiF and Wifoe)
Submission	Registration date: 17-Jul-2015 Technische Universitaet Muenchen
Relevance	Industrial

Project Data:

Assembly level

Number of Assemblies

17
17

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_001702135.1	5	SAMN04505733	TMW 1.481	Fructilactobacillus lindneri
GCA_001702115.1	1	SAMN04505734	TMW 1.1993	Fructilactobacillus lindneri
GCA_001663755.1	8	SAMN04505730	TMW 1.2002	Loigolactobacillus backii
GCA_001663735.1	9	SAMN04505729	TMW 1.1992	Loigolactobacillus backii
GCA_001663715.1	9	SAMN04505728	TMW 1.1991	Loigolactobacillus backii
GCA_001663675.1	8	SAMN04505727	TMW 1.1989	Loigolactobacillus backii
GCA_001663655.1	11	SAMN04505726	TMW 1.1988	Loigolactobacillus backii
GCA_001702235.1	4	SAMN04505732	TMW 2.54	Pediococcus claussenii
GCA_001702215.1	3	SAMN04505731	TMW 2.53	Pediococcus claussenii
GCA_001611075.1	8	SAMN03876482	TMW 2.1533	Pediococcus damnosus
GCA_001611155.1	3	SAMN03876485	TMW 2.1536	Pediococcus damnosus
GCA_001611135.1	6	SAMN03876484	TMW 2.1535	Pediococcus damnosus
GCA_001611115.1	5	SAMN03876483	TMW 2.1534	Pediococcus damnosus
GCA_001611035.1	6	SAMN03876481	TMW 2.1532	Pediococcus damnosus
GCA_001702195.1	9	SAMN04505737	TMW 1.1995	Secundilactobacillus paracollinoides
GCA_001702175.1	9	SAMN04505736	TMW 1.1994	Secundilactobacillus paracollinoides
GCA_001702155.1	3	SAMN04505735	TMW 1.1979	Secundilactobacillus paracollinoides

Supplemental Content

GOLD Multi-Isolate BioProject - 290141 [Genomes On Line Database]
GOLD Multi-Isolate BioProject - 290141
Genomes On Line Database
2687453550: Pediococcus damnosus TMW 2.1533 [Integrated Microbial Genomes]
2687453550: Pediococcus damnosus TMW 2.1533
Integrated Microbial Genomes
2718218335: Loigolactobacillus backii TMW 1.1992 [Integrated Microbial Genomes]
2718218335: Loigolactobacillus backii TMW 1.1992
Integrated Microbial Genomes
2721755716: Secundilactobacillus paracollinoides TMW 1.1995 [Integrated Microbial Genomes]
2721755716: Secundilactobacillus paracollinoides TMW 1.1995
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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