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Genome Information for Homo sapiens
Although clinical features, cytogenetics, and mutations are widely used to predict prognosis in patients with acute myeloid leukemia (AML), further refinement of risk stratification is necessary for optimal treatment, especially in cytogenetically normal (CN) patients. We sought to generate a simple gene expression signature as a predictor of clinical outcome through analyzing the mRNA arrays of de novo CN-AML patients. Among 43 treatment response-related genes, expression of 11 genes was significantly associated with overall survival (OS) in univariate Cox regression analysis in 104 patients who received standard intensive chemotherapy. We integrated the z-transformed expression levels of these 11 genes to generate a risk scoring system. Higher risk scores were significantly associated with shorter OS (median 17.0 months vs. not reached, P<0.001) in ours and 3 other validation cohorts. In conclusion, we developed a simple mRNA expression signature for prognostication in CN-AML patients. This prognostic biomarker will help refine the treatment strategies for this group of patients.
Overall design: Cryopreserved bone marrow cells were obtained from 104 de novo AML patients with normal karyotype. Each sample was analyzed with Illumina HumanHT-12 V4.0 expression beadchip.
| Accession | PRJNA290101; GEO: GSE71014 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications (total 3) Less... | - Wang YH et al., "Distinct clinical and biological characteristics of acute myeloid leukemia with higher expression of long noncoding RNA KIAA0125.", Ann Hematol, 2021 Feb;100(2):487-498
More...- Wang YH et al., "Distinct clinical and biological characteristics of acute myeloid leukemia with higher expression of long noncoding RNA KIAA0125.", Ann Hematol, 2021 Feb;100(2):487-498
- Lee SH et al., "High expression of dedicator of cytokinesis 1 (DOCK1) confers poor prognosis in acute myeloid leukemia.", Oncotarget, 2017 Sep 22;8(42):72250-72259
- Chuang MK et al., "An mRNA expression signature for prognostication in de novo acute myeloid leukemia patients with normal karyotype.", Oncotarget, 2015 Nov 17;6(36):39098-110
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| Submission | Registration date: 16-Jul-2015 Department of Laboratory Medicine, National Taiwan University Hospital |
| Relevance | Medical |
Project Data:
| Resource Name | Number of Links |
|---|
| Publications |
| PubMed | 3 |
| PMC | 3 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 4921592 |
| Data volume, Processed Mbytes | 123 |
| Data volume, Supplementary Mbytes | 19 |