Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA290076 ID: 290076

Homo sapiens (human)

Comprehensive microRNA profiling of Nasopharyngeal Carinoma Specimens

See Genome Information for Homo sapiens
Publication: Identification of a microRNA signature associated with risk of distant metastasis in nasopharyngeal carcinoma Purpose Despite significant improvement in locoregional control in the contemporary era of nasopharyngeal carcinoma (NPC) treatment, patients still suffer from a significant risk of distant metastasis (DM). Identifying those patients at risk of DM would aid in personalized treatment in the future. MicroRNAs (miRNAs) play many important roles in human cancers; hence, we proceeded to address the primary hypothesis that there is a miRNA expression signature capable of predicting DM for NPC patients. Methods and results The expression of 734 miRNAs was measured in 125 (Training) and 121 (Validation) clinically annotated NPC diagnostic biopsy samples. A 4-miRNA expression signature associated with risk of developing DM was identified by fitting a penalized Cox Proportion Hazard regression model to the Training data set (HR 8.25; p < 0.001), and subsequently validated in an independent Validation set (HR 3.2; p = 0.01). Pathway enrichment analysis indicated that the targets of miRNAs associated with DM appear to be converging on cell-cycle pathways. Conclusions This 4-miRNA signature adds to the prognostic value of the current “gold standard” of TNM staging. In-depth interrogation of these 4-miRNAs will provide important biological insights that could facilitate the discovery and development of novel molecularly targeted therapies to improve outcome for future NPC patients. Overall design: The expression of 734 miRNAs was measured in 125 (Training) and 121 (Validation) clinically annotated NPC diagnostic biopsy samples.
AccessionPRJNA290076; GEO: GSE70970
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsBruce JP et al., "Identification of a microRNA signature associated with risk of distant metastasis in nasopharyngeal carcinoma.", Oncotarget, 2015 Feb 28;6(6):4537-50
SubmissionRegistration date: 15-Jul-2015
Princess Margaret Cancer Centre
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Publications
PubMed1
PMC1
Other datasets
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots193042
Data volume, Processed Mbytes4
Data volume, Supplementary Mbytes2

Supplemental Content

Recent activity

  • Homo sapiens
    Homo sapiens
    Comprehensive microRNA profiling of Nasopharyngeal Carinoma Specimens
    BioProject
  • soil eukaryotic communities
    soil eukaryotic communities
    soil eukaryotic communities Raw sequence reads
    BioProject
  • marine metagenome
    marine metagenome
    Marine microbial communities from Saanich Inlet, British Columbia, Canada - 6C-FGYC-5-J13 metagenome
    BioProject
  • The Epigenetic Factor Landscape of Developing Neocortex is Regulated by Transcri...
    The Epigenetic Factor Landscape of Developing Neocortex is Regulated by Transcription Factors Pax6→Tbr2→Tbr1
    The Epigenetic Factor Landscape of Developing Neocortex is Regulated by Transcription Factors Pax6→Tbr2→Tbr1
    BioProject
  • Thermococcus sibiricus MM 739
    Thermococcus sibiricus MM 739
    A hyperthermophilic anaerobic archaeon isolated from an oil reservoir in Western Siberia
    BioProject

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center