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Accession: PRJNA289872 ID: 289872

Mus musculus (house mouse)

Whole-genome DNA methylation analysis for purified WT, Pld6 KO, and Dnmt3l KO spermatogonia

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This project is a component of the The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells
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3 additional projects are components of the The effect of the Pld6 and Dnmt3l mutations on DNA methylation and expression of retrotransposons in mouse male germ cells.
47588 additional projects are related by organism.
DNA methylomes were obtained to analyze methylation levels of retrotransposons as welll as the genome-wide methylation levels. More...
AccessionPRJNA289872; GEO: GSE70888
Data TypeEpigenomics
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsInoue K et al., "Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice.", PLoS Genet, 2017 Jul;13(7):e1006926
SubmissionRegistration date: 14-Jul-2015
Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3
Publications
PubMed1
PMC1
Other datasets
BioSample3
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes238
SRA Data Details
ParameterValue
Data volume, Gbases41
Data volume, Mbytes25120

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