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Accession: PRJNA289243 ID: 289243

Streptococcus pneumoniae

Genomic diversity of nontypeable pneumococcal isolates in South Africa

See Genome Information for Streptococcus pneumoniae
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648 additional projects are related by organism.
The aim of this study is to investigate the epidemiology, molecular structure and genomic diversity of nontypeable pneumococcal isolates in South Africa.
AccessionPRJNA289243
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismStreptococcus pneumoniae[Taxonomy ID: 1313]
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
SubmissionRegistration date: 7-Mar-2016
National Institute for Communicable Diseases
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)41351
WGS master171
Protein Sequences351977
Other datasets
BioSample174
Assembly171
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
170
1
171
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_002866465.1ScaffoldLTCU00000000SAMN04495509
NTPn 231
Streptococcus pneumoniae
GCA_002866445.1ScaffoldLTCT00000000SAMN04495506
NTPn 228
Streptococcus pneumoniae
GCA_002866425.1ScaffoldLTCV00000000SAMN04495516
NTPn 239
Streptococcus pneumoniae
GCA_002866405.1ScaffoldLTCW00000000SAMN04495478
NTPn 183
Streptococcus pneumoniae
GCA_002866375.1ScaffoldLTCS00000000SAMN04495492
NTPn 203
Streptococcus pneumoniae
GCA_002866355.1ScaffoldLTCR00000000SAMN04495476
NTPn 181
Streptococcus pneumoniae
GCA_002866105.1ScaffoldLTCO00000000SAMN04495457
NTPn 152
Streptococcus pneumoniae
GCA_002866085.1ScaffoldLTCH00000000SAMN04495422
NTPn 94
Streptococcus pneumoniae
GCA_002866205.1ScaffoldLTCG00000000SAMN04495419
NTPn 90
Streptococcus pneumoniae
GCA_002866145.1ScaffoldLTCF00000000SAMN04495415
NTPn 85
Streptococcus pneumoniae
GCA_002866165.1ScaffoldLTCP00000000SAMN04495459
NTPn 154
Streptococcus pneumoniae
GCA_002866135.1ScaffoldLTCQ00000000SAMN04495462
NTPn 158
Streptococcus pneumoniae
GCA_002866325.1ScaffoldLTCM00000000SAMN04495448
NTPn 130
Streptococcus pneumoniae
GCA_002866305.1ScaffoldLTCL00000000SAMN04495443
NTPn 124
Streptococcus pneumoniae
GCA_002866265.1ScaffoldLTCK00000000SAMN04495440
NTPn 119
Streptococcus pneumoniae
GCA_002866255.1ScaffoldLTCJ00000000SAMN04495439
NTPn 117
Streptococcus pneumoniae
GCA_002866245.1ScaffoldLTCI00000000SAMN04495426
NTPn 101
Streptococcus pneumoniae
GCA_001581145.1ScaffoldLJVJ00000000SAMN03964619
NTPn 1
Streptococcus pneumoniae
GCA_001581155.1ContigLJVK00000000SAMN03964650
NTPn 45
Streptococcus pneumoniae
GCA_001581135.1ScaffoldLJVL00000000SAMN03964620
NTPn 2
Streptococcus pneumoniae
GCA_001581855.1ScaffoldLJWS00000000SAMN03964654
NTPn 49
Streptococcus pneumoniae
GCA_001581805.1ScaffoldLJWN00000000SAMN03964648
NTPn 43
Streptococcus pneumoniae
GCA_001581825.1ScaffoldLJWI00000000SAMN03964643
NTPn 36
Streptococcus pneumoniae
GCA_001581795.1ScaffoldLJWG00000000SAMN03964642
NTPn 34
Streptococcus pneumoniae
GCA_001581775.1ScaffoldLJWT00000000SAMN03964655
NTPn 50
Streptococcus pneumoniae
GCA_001581745.1ScaffoldLJWR00000000SAMN03964653
NTPn 48
Streptococcus pneumoniae
GCA_001581695.1ScaffoldLJWO00000000SAMN03964649
NTPn 44
Streptococcus pneumoniae
GCA_001581665.1ScaffoldLJWM00000000SAMN03964647
NTPn 42
Streptococcus pneumoniae
GCA_001581735.1ScaffoldLJWQ00000000SAMN03964652
NTPn 47
Streptococcus pneumoniae
GCA_001581715.1ScaffoldLJWP00000000SAMN03964651
NTPn 46
Streptococcus pneumoniae
GCA_001581535.1ScaffoldLJWD00000000SAMN03964638
NTPn 30
Streptococcus pneumoniae
GCA_001581515.1ScaffoldLJWC00000000SAMN03964637
NTPn 29
Streptococcus pneumoniae
GCA_001581555.1ScaffoldLJWF00000000SAMN03964640
NTPn 32
Streptococcus pneumoniae
GCA_001581545.1ScaffoldLJWE00000000SAMN03964639
NTPn 31
Streptococcus pneumoniae
GCA_001581615.1ScaffoldLJWJ00000000SAMN03964644
NTPn 38
Streptococcus pneumoniae
GCA_001581585.1ScaffoldLJWH00000000SAMN03964641
NTPn 33
Streptococcus pneumoniae
GCA_001581645.1ScaffoldLJWL00000000SAMN03964646
NTPn 40
Streptococcus pneumoniae
GCA_001581635.1ScaffoldLJWK00000000SAMN03964645
NTPn 39
Streptococcus pneumoniae
GCA_001581455.1ScaffoldLJWB00000000SAMN03964636
NTPn 28
Streptococcus pneumoniae
GCA_001581425.1ScaffoldLJWA00000000SAMN03964634
NTPn 20
Streptococcus pneumoniae
GCA_001581485.1ScaffoldLJVS00000000SAMN03964626
NTPn 11
Streptococcus pneumoniae
GCA_001581475.1ScaffoldLJVQ00000000SAMN03964624
NTPn 6
Streptococcus pneumoniae
GCA_001581375.1ScaffoldLJVX00000000SAMN03964631
NTPn 16
Streptococcus pneumoniae
GCA_001581355.1ScaffoldLJVW00000000SAMN03964630
NTPn 15
Streptococcus pneumoniae
GCA_001581405.1ScaffoldLJVZ00000000SAMN03964633
NTPn 18
Streptococcus pneumoniae
GCA_001581395.1ScaffoldLJVY00000000SAMN03964632
NTPn 17
Streptococcus pneumoniae
GCA_001581215.1ScaffoldLJVN00000000SAMN03964621
NTPn 3
Streptococcus pneumoniae
GCA_001581165.1ScaffoldLJVM00000000SAMN03964635
NTPn 27
Streptococcus pneumoniae
GCA_001581245.1ScaffoldLJVP00000000SAMN03964623
NTPn 5
Streptococcus pneumoniae
GCA_001581235.1ScaffoldLJVO00000000SAMN03964622
NTPn 4
Streptococcus pneumoniae
GCA_001581295.1ScaffoldLJVT00000000SAMN03964627
NTPn 12
Streptococcus pneumoniae
GCA_001581275.1ScaffoldLJVR00000000SAMN03964625
NTPn 10
Streptococcus pneumoniae
GCA_001581325.1ScaffoldLJVV00000000SAMN03964629
NTPn 14
Streptococcus pneumoniae
GCA_001581305.1ScaffoldLJVU00000000SAMN03964628
NTPn 13
Streptococcus pneumoniae
GCA_008039075.1ScaffoldVRYS00000000SAMN04495475
NTPn 178
Streptococcus pneumoniae
GCA_008039055.1ScaffoldVRYQ00000000SAMN04495494
NTPn 205
Streptococcus pneumoniae
GCA_008039015.1ScaffoldVRYR00000000SAMN04495489
NTPn 200
Streptococcus pneumoniae
GCA_008039135.1ScaffoldVRYW00000000SAMN04495398
NTPn 62
Streptococcus pneumoniae
GCA_008039035.1ScaffoldVRYT00000000SAMN04495469
NTPn 168
Streptococcus pneumoniae
GCA_008039095.1ScaffoldVRYU00000000SAMN04495456
NTPn 151
Streptococcus pneumoniae
GCA_008039115.1ScaffoldVRYV00000000SAMN04495447
NTPn 129
Streptococcus pneumoniae
GCA_008039165.1ScaffoldVRYX00000000SAMN04495391
NTPn 54
Streptococcus pneumoniae
GCA_007786525.1ScaffoldVMXM00000000SAMN04495405
NTPn 69
Streptococcus pneumoniae
GCA_007785315.1ScaffoldVMUJ00000000SAMN04495512
NTPn 234
Streptococcus pneumoniae
GCA_007785275.1ScaffoldVMVE00000000SAMN04495486
NTPn 194
Streptococcus pneumoniae
GCA_007785265.1ScaffoldVMVJ00000000SAMN04495481
NTPn 187
Streptococcus pneumoniae
GCA_007785325.1ScaffoldVMUZ00000000SAMN04495493
NTPn 204
Streptococcus pneumoniae
GCA_007785335.1ScaffoldVMUG00000000SAMN04495515
NTPn 238
Streptococcus pneumoniae
GCA_007785515.1ScaffoldVMVU00000000SAMN04495465
NTPn 162
Streptococcus pneumoniae
GCA_007785495.1ScaffoldVMUY00000000SAMN04495495
NTPn 206
Streptococcus pneumoniae
GCA_007785395.1ScaffoldVMUT00000000SAMN04495500
NTPn 214
Streptococcus pneumoniae
GCA_007785475.1ScaffoldVMVN00000000SAMN04495473
NTPn 175
Streptococcus pneumoniae
GCA_007785405.1ScaffoldVMUF00000000SAMN04495517
NTPn 240
Streptococcus pneumoniae
GCA_007785355.1ScaffoldVMUE00000000SAMN04495518
NTPn 241
Streptococcus pneumoniae
GCA_007785415.1ScaffoldVMUU00000000SAMN04495499
NTPn 212
Streptococcus pneumoniae
GCA_007785425.1ScaffoldVMUA00000000SAMN04495522
NTPn 254
Streptococcus pneumoniae
GCA_007785565.1ScaffoldVMVG00000000SAMN04495484
NTPn 191
Streptococcus pneumoniae
GCA_007785595.1ScaffoldVMUL00000000SAMN04495510
NTPn 232
Streptococcus pneumoniae
GCA_007785485.1ScaffoldVMUR00000000SAMN04495502
NTPn 220
Streptococcus pneumoniae
GCA_007785555.1ScaffoldVMUH00000000SAMN04495514
NTPn 237
Streptococcus pneumoniae
GCA_007785005.1ScaffoldVMVB00000000SAMN04495490
NTPn 201
Streptococcus pneumoniae
GCA_007785155.1ScaffoldVMUP00000000SAMN04495504
NTPn 223
Streptococcus pneumoniae
GCA_007785035.1ScaffoldVMVD00000000SAMN04495487
NTPn 195
Streptococcus pneumoniae
GCA_007785135.1ScaffoldVMVP00000000SAMN04495471
NTPn 171
Streptococcus pneumoniae
GCA_007785115.1ScaffoldVMVK00000000SAMN04495480
NTPn 185
Streptococcus pneumoniae
GCA_007785045.1ScaffoldVMVH00000000SAMN04495483
NTPn 189
Streptococcus pneumoniae
GCA_007785095.1ScaffoldVMVS00000000SAMN04495467
NTPn 165
Streptococcus pneumoniae
GCA_007785015.1ScaffoldVMVL00000000SAMN04495477
NTPn 182
Streptococcus pneumoniae
GCA_007785025.1ScaffoldVMUX00000000SAMN04495496
NTPn 207
Streptococcus pneumoniae
GCA_007784935.1ScaffoldVMVT00000000SAMN04495466
NTPn 163
Streptococcus pneumoniae
GCA_007784895.1ScaffoldVMVM00000000SAMN04495474
NTPn 177
Streptococcus pneumoniae
GCA_007784945.1ScaffoldVMVF00000000SAMN04495485
NTPn 192
Streptococcus pneumoniae
GCA_007784875.1ScaffoldVMUS00000000SAMN04495501
NTPn 215
Streptococcus pneumoniae
GCA_007784915.1ScaffoldVMUW00000000SAMN04495497
NTPn 210
Streptococcus pneumoniae
GCA_007784785.1ScaffoldVMUV00000000SAMN04495498
NTPn 211
Streptococcus pneumoniae
GCA_007784925.1ScaffoldVMVI00000000SAMN04495482
NTPn 188
Streptococcus pneumoniae
GCA_007784865.1ScaffoldVMVR00000000SAMN04495468
NTPn 166
Streptococcus pneumoniae
GCA_007784825.1ScaffoldVMUO00000000SAMN04495505
NTPn 226
Streptococcus pneumoniae
GCA_007784815.1ScaffoldVMVQ00000000SAMN04495470
NTPn 170
Streptococcus pneumoniae
GCA_007784775.1ScaffoldVMUB00000000SAMN04495521
NTPn 251
Streptococcus pneumoniae
GCA_007785235.1ScaffoldVMTZ00000000SAMN04495523
NTPn 256
Streptococcus pneumoniae
GCA_007785245.1ScaffoldVMUM00000000SAMN04495508
NTPn 230
Streptococcus pneumoniae
GCA_007785215.1ScaffoldVMUI00000000SAMN04495513
NTPn 235
Streptococcus pneumoniae
GCA_007785165.1ScaffoldVMVA00000000SAMN04495491
NTPn 202
Streptococcus pneumoniae
GCA_007784765.1ScaffoldVMUK00000000SAMN04495511
NTPn 233
Streptococcus pneumoniae
GCA_007784695.1ScaffoldVMUQ00000000SAMN04495503
NTPn 222
Streptococcus pneumoniae
GCA_007784685.1ScaffoldVMVO00000000SAMN04495472
NTPn 172
Streptococcus pneumoniae
GCA_007784705.1ScaffoldVMVC00000000SAMN04495488
NTPn 196
Streptococcus pneumoniae
GCA_007784675.1ScaffoldVMUD00000000SAMN04495519
NTPn 242
Streptococcus pneumoniae
GCA_007784665.1ScaffoldVMUN00000000SAMN04495507
NTPn 229
Streptococcus pneumoniae
GCA_007844935.1ScaffoldVMUC00000000SAMN04495520
NTPn 244
Streptococcus pneumoniae
GCA_007787585.1ScaffoldVMYC00000000SAMN04495396
NTPn 59
Streptococcus pneumoniae
GCA_007787515.1ScaffoldVMWH00000000SAMN04495445
NTPn 126
Streptococcus pneumoniae
GCA_007787715.1ScaffoldVMYA00000000SAMN04495525
NTPn 263-2
Streptococcus pneumoniae
GCA_007787535.1ScaffoldVMWD00000000SAMN04495452
NTPn 139
Streptococcus pneumoniae
GCA_007787665.1ScaffoldVMXZ00000000SAMN04495389
NTPn 52
Streptococcus pneumoniae
GCA_007787725.1ScaffoldVMYB00000000SAMN04495524
NTPn 259
Streptococcus pneumoniae
GCA_007787645.1ScaffoldVMXL00000000SAMN04495406
NTPn 70
Streptococcus pneumoniae
GCA_007787655.1ScaffoldVMXX00000000SAMN04495392
NTPn 55
Streptococcus pneumoniae
GCA_007787575.1ScaffoldVMWU00000000SAMN04495428
NTPn 103
Streptococcus pneumoniae
GCA_007787625.1ScaffoldVMXP00000000SAMN04495402
NTPn 66
Streptococcus pneumoniae
GCA_007787455.1ScaffoldVMWP00000000SAMN04495433
NTPn 111
Streptococcus pneumoniae
GCA_007787545.1ScaffoldVMXC00000000SAMN04495417
NTPn 88
Streptococcus pneumoniae
GCA_007787525.1ScaffoldVMWA00000000SAMN04495455
NTPn 147
Streptococcus pneumoniae
GCA_007787475.1ScaffoldVMXV00000000SAMN04495394
NTPn 57
Streptococcus pneumoniae
GCA_007787445.1ScaffoldVMXW00000000SAMN04495393
NTPn 56
Streptococcus pneumoniae
GCA_007787435.1ScaffoldVMXD00000000SAMN04495416
NTPn 87
Streptococcus pneumoniae
GCA_007787365.1ScaffoldVMWE00000000SAMN04495450
NTPn 135
Streptococcus pneumoniae
GCA_007787395.1ScaffoldVMXY00000000SAMN04495390
NTPn 53
Streptococcus pneumoniae
GCA_007787375.1ScaffoldVMVY00000000SAMN04495460
NTPn 155
Streptococcus pneumoniae
GCA_007787355.1ScaffoldVMXH00000000SAMN04495410
NTPn 75
Streptococcus pneumoniae
GCA_007787285.1ScaffoldVMWM00000000SAMN04495436
NTPn 114
Streptococcus pneumoniae
GCA_007787155.1ScaffoldVMWJ00000000SAMN04495442
NTPn 121
Streptococcus pneumoniae
GCA_007787035.1ScaffoldVMWR00000000SAMN04495431
NTPn 109
Streptococcus pneumoniae
GCA_007787335.1ScaffoldVMWK00000000SAMN04495441
NTPn 120
Streptococcus pneumoniae
GCA_007787185.1ScaffoldVMXS00000000SAMN04495399
NTPn 63
Streptococcus pneumoniae
GCA_007787275.1ScaffoldVMXU00000000SAMN04495395
NTPn 58
Streptococcus pneumoniae
GCA_007787245.1ScaffoldVMWV00000000SAMN04495427
NTPn 102
Streptococcus pneumoniae
GCA_007787205.1ScaffoldVMXK00000000SAMN04495407
NTPn 71
Streptococcus pneumoniae
GCA_007787295.1ScaffoldVMWF00000000SAMN04495449
NTPn 134
Streptococcus pneumoniae
GCA_007787145.1ScaffoldVMWB00000000SAMN04495454
NTPn 146
Streptococcus pneumoniae
GCA_007787135.1ScaffoldVMWX00000000SAMN04495424
NTPn 97
Streptococcus pneumoniae
GCA_007787215.1ScaffoldVMXQ00000000SAMN04495401
NTPn 65
Streptococcus pneumoniae
GCA_007786975.1ScaffoldVMVZ00000000SAMN04495458
NTPn 153
Streptococcus pneumoniae
GCA_007787115.1ScaffoldVMXB00000000SAMN04495418
NTPn 89
Streptococcus pneumoniae
GCA_007787075.1ScaffoldVMWG00000000SAMN04495446
NTPn 127
Streptococcus pneumoniae
GCA_007787045.1ScaffoldVMWS00000000SAMN04495430
NTPn 106
Streptococcus pneumoniae
GCA_007787055.1ScaffoldVMXR00000000SAMN04495400
NTPn 64
Streptococcus pneumoniae
GCA_007786875.1ScaffoldVMXA00000000SAMN04495420
NTPn 92
Streptococcus pneumoniae
GCA_007787005.1ScaffoldVMXG00000000SAMN04495411
NTPn 76
Streptococcus pneumoniae
GCA_007786905.1ScaffoldVMVV00000000SAMN04495464
NTPn 161
Streptococcus pneumoniae
GCA_007786965.1ScaffoldVMWQ00000000SAMN04495432
NTPn 110
Streptococcus pneumoniae
GCA_007786845.1ScaffoldVMXE00000000SAMN04495414
NTPn 84
Streptococcus pneumoniae
GCA_007786955.1ScaffoldVMWC00000000SAMN04495453
NTPn 140
Streptococcus pneumoniae
GCA_007786775.1ScaffoldVMWW00000000SAMN04495425
NTPn 100
Streptococcus pneumoniae
GCA_007786865.1ScaffoldVMXO00000000SAMN04495403
NTPn 67
Streptococcus pneumoniae
GCA_007786925.1ScaffoldVMXJ00000000SAMN04495408
NTPn 72
Streptococcus pneumoniae
GCA_007786835.1ScaffoldVMXN00000000SAMN04495404
NTPn 68
Streptococcus pneumoniae
GCA_007786685.1ScaffoldVMWN00000000SAMN04495435
NTPn 113
Streptococcus pneumoniae
GCA_007786805.1ScaffoldVMWO00000000SAMN04495434
NTPn 112
Streptococcus pneumoniae
GCA_007786755.1ScaffoldVMVW00000000SAMN04495463
NTPn 159
Streptococcus pneumoniae
GCA_007786765.1ScaffoldVMWZ00000000SAMN04495421
NTPn 93
Streptococcus pneumoniae
GCA_007786715.1ScaffoldVMXI00000000SAMN04495409
NTPn 73
Streptococcus pneumoniae
GCA_007786615.1ScaffoldVMWL00000000SAMN04495438
NTPn 116
Streptococcus pneumoniae
GCA_007786675.1ScaffoldVMXT00000000SAMN04495397
NTPn 60
Streptococcus pneumoniae
GCA_007786695.1ScaffoldVMWY00000000SAMN04495423
NTPn 95
Streptococcus pneumoniae
GCA_007786645.1ScaffoldVMXF00000000SAMN04495412
NTPn 79
Streptococcus pneumoniae
GCA_007786605.1ScaffoldVMWI00000000SAMN04495444
NTPn 125
Streptococcus pneumoniae
GCA_007786565.1ScaffoldVMWT00000000SAMN04495429
NTPn 104
Streptococcus pneumoniae
GCA_007786585.1ScaffoldVMVX00000000SAMN04495461
NTPn 156
Streptococcus pneumoniae
GCA_002866345.1ScaffoldLTCN00000000SAMN04495451
NTPn 138
Streptococcus pseudopneumoniae

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