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Accession: PRJNA289192 ID: 289192

Homo sapiens (human)

Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis.

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66643 additional projects are related by organism.
Using 1 melanocyte and 6 melanoma cell line (3 pair of primary and metastatic), we generated base-resolution DNA methylation maps to document DNA methylation drivers of melanoma metastasis. More...
AccessionPRJNA289192; GEO: GSE70621
Data TypeEpigenomics
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsChatterjee A et al., "Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis.", Oncotarget, 2017 Jan 24;8(4):6085-6101
SubmissionRegistration date: 8-Jul-2015
Epigenetics and Disease, Pathology, University of Otago
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments7
Publications
PubMed1
PMC1
Other datasets
BioSample7
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes62
SRA Data Details
ParameterValue
Data volume, Gbases17
Data volume, Mbytes9946

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