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Accession: PRJNA28909 ID: 28909

Freshwater Metagenome

Viral and microbial freshwater metagenome

Viral and microbial freshwater metagenomes collected from different fish ponds at Kent SeaTech (Salton, CA).
AccessionPRJNA28909
TypeUmbrella project
Organismfreshwater metagenome[Taxonomy ID: 449393]
unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
PublicationsDinsdale EA et al., "Functional metagenomic profiling of nine biomes.", Nature, 2008 Apr 3;452(7187):629-32
SubmissionRegistration date: 4-Mar-2008
SDSU Center for Universal Microbial Sequencing
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)8
SRA Experiments6
Publications
PubMed1
Other datasets
BioSample8
Assembly8
SRA Data Details
ParameterValue
Data volume, Mbases104
Data volume, Mbytes267
Freshwater Metagenome encompasses the following 8 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds
Contigs
Total

1
7
8
BioProject
accession
Assembly
level
OrganismTitle
PRJNA28361 Contigsfreshwater metagenomeViral community isolated from Kent SeaTech tilapia pond (SDSU Center for Universal...)
PRJNA28387 Scaffoldsfreshwater metagenomeMicrobial community isolated from Kent SeaTech tilapia pond (SDSU Center for Universal...)
PRJNA28405 Contigsfreshwater metagenomeMicrobial community isolated from Kent SeaTech tilapia pond (SDSU Center for Universal...)
PRJNA28407 Contigsfreshwater metagenomeMicrobial community isolated from Kent SeaTech prebead pond (SDSU Center for Universal...)
PRJNA28409 Contigsfreshwater metagenomeViral community isolated from Kent SeaTech tilapia pond (SDSU Center for Universal...)
List all 8 'Genome sequencing' projects...

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