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Accession: PRJNA288134 ID: 288134

Homo sapiens (human)

RNA-seq of cytosolic and chromatin-associated transcripts following TNFα and Spt5 KD

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We examined the effects of TNFα and Spt5, the major DSIF subunit, on nascent and mature transcripts using RNA-Seq of chromatin-associated and cytoplasmic transcripts. More...
AccessionPRJNA288134; GEO: GSE70268
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsDiamant G et al., "Analysis of Subcellular RNA Fractions Revealed a Transcription-Independent Effect of Tumor Necrosis Factor Alpha on Splicing, Mediated by Spt5.", Mol Cell Biol, 2016 May;36(9):1342-53
SubmissionRegistration date: 25-Jun-2015
The Weizmann Institute of Science
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments8
Publications
PubMed1
PMC1
Other datasets
BioSample8
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases97
Data volume, Mbytes62290

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