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Accession: PRJNA288035 ID: 288035

Mus musculus (house mouse)

Using single-cell RNA-Seq for unbiased analysis of developmental hierarchies (single cell RNA Seq of bone marrow lineage-negative Sca1+ CD117+ cells)

See Genome Information for Mus musculus
Single cell RNA seq and bioinformatic analysis is used to characterize myeloid differentiation to uncover novel transcriptional networks and key drivers of hematoipoietic development Overall design: Single cell RNA seq of different hematopoietic populations integrated with Chip seq involving multiple markers
AccessionPRJNA288035; GEO: GSE70244
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsOlsson A et al., "Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.", Nature, 2016 Sep 29;537(7622):698-702
SubmissionRegistration date: 24-Jun-2015
Grimes, Immunobiology, Cincinnati Childrens Hospital Medical Center
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments96
Publications
PubMed1
PMC1
Other datasets
BioSample96
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3
SRA Data Details
ParameterValue
Data volume, Gbases48
Data volume, Mbytes33351

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