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Accession: PRJNA287823 ID: 287823

Human and mouse DRIP-seq and DRIPc-seq

This study profiles RNA:DNA hybrid formation in human and mouse cell lines. Overall design: DRIPc-seq (strand-specific R-loop mapping) was performed on human NT2 cells and mouse 3T3 cells. More...
AccessionPRJNA287823; GEO: GSE70189
ScopeMultispecies
Publications
  • Sanz LA et al., "High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.", Nat Protoc, 2019 Jun;14(6):1734-1755
  • Sanz LA et al., "Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.", Mol Cell, 2016 Jul 7;63(1):167-78
SubmissionRegistration date: 23-Jun-2015
Chedin, Molecular and Cellular Biology, University of California, Davis
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments13
Publications
PubMed2
PMC2
Other datasets
BioSample13
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes3153
SRA Data Details
ParameterValue
Data volume, Gbases83
Data volume, Mbytes52727

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