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Accession: PRJNA287709 ID: 287709

Dictyostelium discoideum

Regulation of nucleosome positioning by a CHD Type III chromatin remodeller and its relationship to developmental gene expression in Dictyostelium [MNase-seq]

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We utilized MNase-seq to profile nucleosome positions in wild type (Ax2) and ChdC null cells both in growing cells and a partially developed state (loose-mound) to study changes in nucleosome positioning and occupancy during development and the impact the deletion of ChdC an ATP-dependent chromatin remodeller has on nucleosome positioning and occupancy. More...
AccessionPRJNA287709; GEO: GSE70122
Data TypeEpigenomics
ScopeMultiisolate
OrganismDictyostelium discoideum[Taxonomy ID: 44689]
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum
PublicationsPlatt JL et al., "Regulation of nucleosome positioning by a CHD Type III chromatin remodeler and its relationship to developmental gene expression in Dictyostelium.", Genome Res, 2017 Apr;27(4):591-600
SubmissionRegistration date: 22-Jun-2015
University of Oxford
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments9
Publications
PubMed1
PMC1
Other datasets
BioSample9
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes87
SRA Data Details
ParameterValue
Data volume, Gbases61
Data volume, Mbytes26072

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