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Accession: PRJNA286282 ID: 286282

Mus musculus (house mouse)

Knockdown of SR protein family in P19 cells and RNA-seq of cytoplasmic and whole cell polyA+ RNA

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This project is a component of the SR protein family in P19 cells
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1 additional project is a component of the SR protein family in P19 cells.
47588 additional projects are related by organism.
Our data suggest that all SR proteins contribute to mRNA export via NXF1. To identify endogenous export targets we depleted all seven SR proteins individually from P19 WT cells prepared cytoplasmic fractions. More...
AccessionPRJNA286282; GEO: GSE69733
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsMüller-McNicoll M et al., "SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.", Genes Dev, 2016 Mar 1;30(5):553-66
SubmissionRegistration date: 10-Jun-2015
RNA Regulation Group, Institute for Cell Biology and Neuroscience, Goethe University Frankfurt
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments32
Publications
PubMed1
PMC1
Other datasets
BioSample32
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes326
SRA Data Details
ParameterValue
Data volume, Gbases111
Data volume, Mbytes77780

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