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Accession: PRJNA28595 ID: 28595

Metagenomes from Porites compressa Following Stress

Viral and microbial metagenomes isolated from Porites compressa following various stress experiments

Viral and microbial metagenomes were isolated from Porites compressa during the following stressor experiments: temperature, dissolved organic carbon, reduced pH, and nutrients.
AccessionPRJNA28595
TypeUmbrella Metagenome project (Subtype:Metagenome)
Organismcoral metagenome[Taxonomy ID: 496922]
unclassified sequences; metagenomes; organismal metagenomes; coral metagenome
Publications
  • Dinsdale EA et al., "Functional metagenomic profiling of nine biomes.", Nature, 2008 Apr 3;452(7187):629-32
  • Wegley L et al., "Metagenomic analysis of the microbial community associated with the coral Porites astreoides.", Environ Microbiol, 2007 Nov;9(11):2707-19
SubmissionRegistration date: 28-Jan-2008
SDSU Center for Universial Microbial Sequencing
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)13
SRA Experiments13
Publications
PubMed4
PMC1
Other datasets
BioSample13
Assembly13
SRA Data Details
ParameterValue
Data volume, Mbases114
Data volume, Mbytes289
Metagenomes from Porites compressa Following Stress encompasses the following 13 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds
Contigs
Total

1
12
13
BioProject
accession
Assembly
level
OrganismTitle
PRJNA28371 Contigscoral metagenomeMetagenome community from Porites astreoides (SDSU Center for Universal...)
PRJNA28415 Scaffoldscoral metagenomeViral community from coral (SDSU Center for Universal...)
PRJNA28417 Contigscoral metagenomeViral community from coral (SDSU Center for Universal...)
PRJNA28419 Contigscoral metagenomeViral community from coral (SDSU Center for Universal...)
PRJNA28421 Contigscoral metagenomeViral community from coral (SDSU Center for Universal...)
List all 13 'Genome sequencing' projects...

Supplemental Content

Recent activity

  • Metagenomes from Porites compressa Following Stress
    Metagenomes from Porites compressa Following Stress
    Viral and microbial metagenomes isolated from Porites compressa following various stress experiments
    BioProject
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    hot spring metagenome
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    Demonstration Project Reference Genome for Human Microbiome Project
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    salt lake metagenome
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    BioProject
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    Cyanophage P-RSM6
    Cyanophage P-RSP3 genome sequencing project
    BioProject

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