Genome sequencing and de novo assembly of an orange cultivated carrot (Daucus carota subsp. sativus) doubled haploid. Transcriptome sequencing from multiple tissues for annotation. Sequencing of related species and genera. Gene expression analysis.
| Accession | PRJNA285926 |
| Type | Umbrella project |
| Publications | Iorizzo M et al., "A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.", Nat Genet, 2016 Jun;48(6):657-66 |
| Submission | Registration date: 4-Jun-2015
USDA ARS |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 4682 |
| WGS master | 1 |
| SRA Experiments | 64 |
| Protein Sequences | 32113 |
| Publications |
| PubMed | 3 |
| PMC | 2 |
| Other datasets |
| BioSample | 56 |
| Assembly | 1 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
1
1
2
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA268187 | Chromosomes | Daucus carota subsp. sativus | Daucus carota subsp. sativus cultivar:DH1 Genome sequencing and assembly (USDA ARS) | | PRJNA291976 | SRA or Trace | Daucus sp. | Cultivated and wild carrots (Daucus carota ssp. sativus and ssp. carota) and outgroup species (sahariensis, syrticus, aureus, and guttatus) raw sequence reads (USDA ARS) |
|
| transcriptome | 1 |
|