Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA285485 ID: 285485

marine metagenome

Equatorial Pacific Ocean Targeted loci environmental

To (i) document vertical distributions of bacterial diversity and community composition, (ii) investigate how these communities vary from one oceanographic region to another, and (iii) test the extent to which bacterial communities of deep subseafloor sediment may originate in the water column, we used 454 pyrosequencing technology and the v4-v6 hypervariable region of the bacterial 16S rRNA gene to examine bacterial community composition (presence/absence and relative abundance) in the water column, near-seafloor sediment (5 cm), and subseafloor sediment at three environmentally distinct Pacific sites: the very high-productivity eastern equatorial upwelling region (EQP1), the moderately high-productivity open-ocean central equatorial upwelling region (EQP8) and the very low-productivity northern gyre (EQP11) (Figure 1).
AccessionPRJNA285485
Data TypeTargeted loci environmental
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
Grants
  • "Microbial Population Structure of the World’s Oceans" (Grant ID DT063006, W. M. Keck Foundation)
  • "Oceanographic Control And Global Distributions Of Subseafloor Microbial Life And Activity" (Grant ID OCE-0752336, National Science Foundation)
  • "Center for Dark Energy Biosphere Investigations" (Grant ID OCE-0939564, National Science Foundation)
SubmissionRegistration date: 1-Jun-2015
Marine Biological Laboratory
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments39
Other datasets
BioSample39
SRA Data Details
ParameterValue
Data volume, Mbases480
Data volume, Mbytes1034

Supplemental Content

Related Resources

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center