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Assessment of regions of open chromatin by FAIRE-seq in THP-1 cells treated with 1,25(OH)2D3 for 0-48 h
Overall design: Three independent experiments of 1,25(OH)2D3 time course in THP-1 cells
| Accession | PRJNA285102; GEO: GSE69297 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | - Warwick T et al., "A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes.", Sci Rep, 2021 Mar 22;11(1):6518
- Seuter S et al., "Epigenome-wide effects of vitamin D and their impact on the transcriptome of human monocytes involve CTCF.", Nucleic Acids Res, 2016 May 19;44(9):4090-104
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| Submission | Registration date: 27-May-2015
Institute of Biomedicine, University of Eastern Finland |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 14 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 14 |
| GEO DataSets | 1 |