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Accession: PRJNA284925 ID: 284925

Solanum lycopersicum (tomato)

Large scale sequencing of viroid derived small RNA in Potato spindle tuber viroid infected tomato plants

See Genome Information for Solanum lycopersicum
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In order to analyze the production of small RNA (sRNA) by viroids upon infecting the plants, the tomato plants (Lycopersicum esculentum cv. More...
AccessionPRJNA284925; GEO: GSE69225
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismSolanum lycopersicum[Taxonomy ID: 4081]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon; Solanum lycopersicum
Publications
  • Adkar-Purushothama CR et al., "Analysis of small RNA production patterns among the two potato spindle tuber viroid variants in tomato plants.", Genom Data, 2015 Dec;6:65-6
  • Adkar-Purushothama CR et al., "Small RNA Derived from the Virulence Modulating Region of the Potato spindle tuber viroid Silences callose synthase Genes of Tomato Plants.", Plant Cell, 2015 Aug;27(8):2178-94
SubmissionRegistration date: 26-May-2015
Biochemistry, Université de Sherbrooke
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3
Publications
PubMed2
PMC2
Other datasets
BioSample3
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes176
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes433

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