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Accession: PRJNA284740 ID: 284740

Mus musculus (house mouse)

Allelome.PRO A pipeline to define allele-specific genome features

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47588 additional projects are related by organism.
We used RNA-seq data from mouse embryonic fibroblasts from F1 reciprocal crosses to determine a biologically relevant allelic ratio cutoff, and define for the first time an entire allelome. More...
AccessionPRJNA284740; GEO: GSE69168
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsAndergassen D et al., "Allelome.PRO, a pipeline to define allele-specific genomic features from high-throughput sequencing data.", Nucleic Acids Res, 2015 Dec 2;43(21):e146
SubmissionRegistration date: 22-May-2015
Barlow, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments10
Publications
PubMed1
PMC1
Other datasets
BioSample10
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes45
SRA Data Details
ParameterValue
Data volume, Gbases76
Data volume, Mbytes53557

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