See
Genome Information for Xenopus laevis
To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastomeres at 8-cell stage, extracted the maternal mRNA respectively and analyzed them by RNA-seq technology. We identified 43 maternal transcripts significantly enriched in the vegetal region (FDR<0.05) by R/Bioconductor package DESeq
Overall design: RNAseq of animal and vegetal blastomeres with 2 biological replicates
| Accession | PRJNA284242; GEO: GSE68972 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Xenopus laevis[Taxonomy ID: 8355] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis |
| Publications | Sun G et al., "Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of Receptor-regulated Smads (R-Smads) to Ensure Transforming Growth Factor β (TGFβ)-mediated Germ Layer Induction in Xenopus Embryos.", J Biol Chem, 2015 Jul 10;290(28):17239-49 |
| Submission | Registration date: 18-May-2015
Michael Q. Zhang, Biology, Tsinghua Univeristy |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 4 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 4 |
| GEO DataSets | 1 |