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Accession: PRJNA28415 ID: 28415

coral metagenome

Viral community from coral

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This project is a component of the Viral and microbial metagenomes isolated from Porites compressa following various stress experiments
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12 additional projects are components of the Viral and microbial metagenomes isolated from Porites compressa following various stress experiments.
Viruses were collected from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef (21. More...
AccessionPRJNA28415
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismcoral metagenome[Taxonomy ID: 496922]
unclassified sequences; metagenomes; organismal metagenomes; coral metagenome
Publications
  • Vega Thurber RL et al., "Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.", Proc Natl Acad Sci U S A, 2008 Nov 25;105(47):18413-8
  • Dinsdale EA et al., "Functional metagenomic profiling of nine biomes.", Nature, 2008 Apr 3;452(7187):629-32
SubmissionRegistration date: 24-Apr-2008
SDSU Center for Universal Microbial Sequencing
NCBI Links
Locus Tag PrefixAKG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1
SRA Experiments1
Publications
PubMed2
PMC1
Other datasets
BioSample1
Assembly1
Assembly details:
AssemblyLevelWGSBioSampleTaxonomy
GCA_000206145.1ScaffoldABNK00000000SAMN00000160
coral metagenome
SRA Data Details
ParameterValue
Data volume, Mbases4
Data volume, Mbytes10

Supplemental Content

Related information

NCBI Links

Related Resources

LinkOut to external resources

  • GOLD: Gp0051451 [Genomes On Line Database]
    GOLD: Gp0051451
    Genomes On Line Database

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