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Accession: PRJNA282742 ID: 282742

Arabidopsis thaliana (thale cress)

rRNA 5-methylcytosine in Arabidopsis thaliana

See Genome Information for Arabidopsis thaliana
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5934 additional projects are related by organism.
Here we use bisulfite conversion of RNA combined with high-throughput IIlumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites in ribosomal RNAs of all three sub-cellular transcriptomes in Arabidopsis thaliana. More...
AccessionPRJNA282742; GEO: GSE68444
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsBurgess AL et al., "Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae.", BMC Plant Biol, 2015 Aug 14;15:199
SubmissionRegistration date: 30-Apr-2015
Iain Searle Laboratory, Genetics and Evolution, University of Adelaide
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RelevanceModel Organism
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Sequence data
SRA Experiments25
Publications
PubMed1
PMC1
Other datasets
BioSample25
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases7
Data volume, Mbytes4323

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