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Accession: PRJNA282164 ID: 282164

Pseudomonas aeruginosa

Pseudomonas aeruginosa Genome sequencing and assembly

See Genome Information for Pseudomonas aeruginosa
We performed a short-term longitudinal, population-level analysis of P. aeruginosa isolated from a single CF patient. More...
AccessionPRJNA282164
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismPseudomonas aeruginosa[Taxonomy ID: 287]
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa
PublicationsDiaz Caballero J et al., "Selective Sweeps and Parallel Pathoadaptation Drive Pseudomonas aeruginosa Evolution in the Cystic Fibrosis Lung.", MBio, 2015 Sep 1;6(5):e00981-15
Grants
  • "assessing the breadth and depth of cystic fibrosis-associated polymicrobial respiratory tract infections" (Grant ID 89356, Canadian institute of health research)
SubmissionRegistration date: 5-May-2015
University of Toronto
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)45325
WGS master233
Publications
PubMed1
PMC1
Other datasets
BioSample233
Assembly233
Assembly details:
Assembly levelNumber of Assemblies
233
233
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000988005.1ScaffoldLBMB00000000SAMN03566230
Pae_CF67.01b
GCA_000987945.1ScaffoldLBLT00000000SAMN03566229
Pae_CF67.01a
GCA_001010525.1ScaffoldLCUS00000000SAMN03566249
Pae_CF67.02b
GCA_001010545.1ScaffoldLCUR00000000SAMN03566248
Pae_CF67.02a
GCA_001010535.1ScaffoldLCUT00000000SAMN03566250
Pae_CF67.02c
GCA_001007485.1ScaffoldLCSN00000000SAMN03566232
Pae_CF67.01d
GCA_001007465.1ScaffoldLCSP00000000SAMN03566234
Pae_CF67.01f
GCA_001007475.1ScaffoldLCSY00000000SAMN03566243
Pae_CF67.01o
GCA_001007415.1ScaffoldLCTA00000000SAMN03566245
Pae_CF67.01q
GCA_001007425.1ScaffoldLCTC00000000SAMN03566247
Pae_CF67.01s
GCA_001007385.1ScaffoldLCST00000000SAMN03566238
Pae_CF67.01j
GCA_001007395.1ScaffoldLCSW00000000SAMN03566241
Pae_CF67.01m
GCA_001007345.1ScaffoldLCSR00000000SAMN03566236
Pae_CF67.01h
GCA_001007355.1ScaffoldLCSO00000000SAMN03566233
Pae_CF67.01e
GCA_001007315.1ScaffoldLCSX00000000SAMN03566242
Pae_CF67.01n
GCA_001007285.1ScaffoldLCSS00000000SAMN03566237
Pae_CF67.01i
GCA_001007265.1ScaffoldLCTB00000000SAMN03566246
Pae_CF67.01r
GCA_001007275.1ScaffoldLCSU00000000SAMN03566239
Pae_CF67.01k
GCA_001007195.1ScaffoldLCSQ00000000SAMN03566235
Pae_CF67.01g
GCA_001007205.1ScaffoldLCSM00000000SAMN03566231
Pae_CF67.01c
GCA_001007215.1ScaffoldLCSV00000000SAMN03566240
Pae_CF67.01l
GCA_001007185.1ScaffoldLCSZ00000000SAMN03566244
Pae_CF67.01p
GCA_001039325.1ScaffoldLFDI00000000SAMN03566315
Pae_CF67.05j
GCA_001037385.1ScaffoldLEGJ00000000SAMN03566363
Pae_CF67.07s
GCA_001037395.1ScaffoldLEGK00000000SAMN03566364
Pae_CF67.07t
GCA_001037435.1ScaffoldLEGM00000000SAMN03566366
Pae_CF67.08b
GCA_001037425.1ScaffoldLEGL00000000SAMN03566365
Pae_CF67.08a
GCA_001037055.1ScaffoldLEFJ00000000SAMN03566337
Pae_CF67.06m
GCA_001037045.1ScaffoldLEFI00000000SAMN03566336
Pae_CF67.06l
GCA_001036675.1ScaffoldLEJX00000000SAMN03566455
Pae_CF67.12l
GCA_001036685.1ScaffoldLEJY00000000SAMN03566456
Pae_CF67.12m
GCA_001036655.1ScaffoldLEJW00000000SAMN03566454
Pae_CF67.12k
GCA_001036645.1ScaffoldLEJV00000000SAMN03566453
Pae_CF67.12j
GCA_001036605.1ScaffoldLEJU00000000SAMN03566452
Pae_CF67.12i
GCA_001036575.1ScaffoldLEJS00000000SAMN03566450
Pae_CF67.12g
GCA_001036585.1ScaffoldLEJT00000000SAMN03566451
Pae_CF67.12h
GCA_001036565.1ScaffoldLEJR00000000SAMN03566449
Pae_CF67.12f
GCA_001036545.1ScaffoldLEJQ00000000SAMN03566448
Pae_CF67.12e
GCA_001036495.1ScaffoldLEJP00000000SAMN03566447
Pae_CF67.12d
GCA_001036505.1ScaffoldLEJO00000000SAMN03566446
Pae_CF67.12c
GCA_001036485.1ScaffoldLEJN00000000SAMN03566443
Pae_CF67.11t
GCA_001036465.1ScaffoldLEJM00000000SAMN03566442
Pae_CF67.11s
GCA_001036405.1ScaffoldLEJJ00000000SAMN03566439
Pae_CF67.11o
GCA_001036415.1ScaffoldLEJK00000000SAMN03566440
Pae_CF67.11p
GCA_001036425.1ScaffoldLEJL00000000SAMN03566441
Pae_CF67.11q
GCA_001036385.1ScaffoldLEJI00000000SAMN03566438
Pae_CF67.11n
GCA_001036315.1ScaffoldLEJF00000000SAMN03566445
Pae_CF67.12b
GCA_001036335.1ScaffoldLEJG00000000SAMN03566436
Pae_CF67.11l
GCA_001036355.1ScaffoldLEJH00000000SAMN03566437
Pae_CF67.11m
GCA_001036305.1ScaffoldLEJE00000000SAMN03566444
Pae_CF67.12a
GCA_001036265.1ScaffoldLEJD00000000SAMN03566435
Pae_CF67.11k
GCA_001036255.1ScaffoldLEJC00000000SAMN03566434
Pae_CF67.11j
GCA_001036235.1ScaffoldLEJB00000000SAMN03566433
Pae_CF67.11i
GCA_001036225.1ScaffoldLEJA00000000SAMN03566432
Pae_CF67.11h
GCA_001037345.1ScaffoldLEGF00000000SAMN03566359
Pae_CF67.07o
GCA_001037355.1ScaffoldLEGH00000000SAMN03566361
Pae_CF67.07q
GCA_001037315.1ScaffoldLEGC00000000SAMN03566356
Pae_CF67.07l
GCA_001037305.1ScaffoldLEGB00000000SAMN03566355
Pae_CF67.07k
GCA_001037275.1ScaffoldLEFL00000000SAMN03566339
Pae_CF67.06o
GCA_001037265.1ScaffoldLEFM00000000SAMN03566340
Pae_CF67.06p
GCA_001037235.1ScaffoldLEGA00000000SAMN03566354
Pae_CF67.07j
GCA_001037225.1ScaffoldLEFY00000000SAMN03566352
Pae_CF67.07h
GCA_001037195.1ScaffoldLEFX00000000SAMN03566351
Pae_CF67.07g
GCA_001037185.1ScaffoldLEFT00000000SAMN03566347
Pae_CF67.07c
GCA_001037165.1ScaffoldLEFR00000000SAMN03566345
Pae_CF67.07a
GCA_001037145.1ScaffoldLEFP00000000SAMN03566343
Pae_CF67.06s
GCA_001037125.1ScaffoldLEFO00000000SAMN03566342
Pae_CF67.06r
GCA_001037105.1ScaffoldLEFN00000000SAMN03566341
Pae_CF67.06q
GCA_001037065.1ScaffoldLEFK00000000SAMN03566338
Pae_CF67.06n
GCA_001037025.1ScaffoldLEFG00000000SAMN03566334
Pae_CF67.06i
GCA_001036985.1ScaffoldLEFE00000000SAMN03566332
Pae_CF67.06g
GCA_001036965.1ScaffoldLEFC00000000SAMN03566330
Pae_CF67.06e
GCA_001036975.1ScaffoldLEFD00000000SAMN03566331
Pae_CF67.06f
GCA_001036915.1ScaffoldLEFB00000000SAMN03566329
Pae_CF67.06d
GCA_001036905.1ScaffoldLEEZ00000000SAMN03566327
Pae_CF67.06b
GCA_001036885.1ScaffoldLEEY00000000SAMN03566326
Pae_CF67.06a
GCA_001036895.1ScaffoldLEFA00000000SAMN03566328
Pae_CF67.06c
GCA_001036825.1ScaffoldLEEV00000000SAMN03566323
Pae_CF67.05r
GCA_001035065.1ScaffoldLEGU00000000SAMN03566374
Pae_CF67.08j
GCA_001035035.1ScaffoldLEGT00000000SAMN03566373
Pae_CF67.08i
GCA_001035025.1ScaffoldLEGS00000000SAMN03566372
Pae_CF67.08h
GCA_001035005.1ScaffoldLEGR00000000SAMN03566371
Pae_CF67.08g
GCA_001034985.1ScaffoldLEGQ00000000SAMN03566370
Pae_CF67.08f
GCA_001034955.1ScaffoldLEGP00000000SAMN03566369
Pae_CF67.08e
GCA_001034945.1ScaffoldLEGO00000000SAMN03566368
Pae_CF67.08d
GCA_001034915.1ScaffoldLEGN00000000SAMN03566367
Pae_CF67.08c
GCA_001034905.1ScaffoldLEGI00000000SAMN03566362
Pae_CF67.07r
GCA_001034855.1ScaffoldLEGE00000000SAMN03566358
Pae_CF67.07n
GCA_001034875.1ScaffoldLEGG00000000SAMN03566360
Pae_CF67.07p
GCA_001034825.1ScaffoldLEFZ00000000SAMN03566353
Pae_CF67.07i
GCA_001034835.1ScaffoldLEGD00000000SAMN03566357
Pae_CF67.07m
GCA_001034755.1ScaffoldLEFU00000000SAMN03566348
Pae_CF67.07d
GCA_001034785.1ScaffoldLEFW00000000SAMN03566350
Pae_CF67.07f
GCA_001034765.1ScaffoldLEFV00000000SAMN03566349
Pae_CF67.07e
GCA_001034745.1ScaffoldLEFS00000000SAMN03566346
Pae_CF67.07b
GCA_001034695.1ScaffoldLEFQ00000000SAMN03566344
Pae_CF67.06t
GCA_001034685.1ScaffoldLEFH00000000SAMN03566335
Pae_CF67.06j
GCA_001034675.1ScaffoldLEFF00000000SAMN03566333
Pae_CF67.06h
GCA_001034665.1ScaffoldLEEW00000000SAMN03566324
Pae_CF67.05s
GCA_001036725.1ScaffoldLEJZ00000000SAMN03566457
Pae_CF67.12n
GCA_001036735.1ScaffoldLEKA00000000SAMN03566458
Pae_CF67.12o
GCA_001036775.1ScaffoldLEKC00000000SAMN03566460
Pae_CF67.12q
GCA_001036765.1ScaffoldLEKB00000000SAMN03566459
Pae_CF67.12p
GCA_001036835.1ScaffoldLEEX00000000SAMN03566325
Pae_CF67.05t
GCA_001036815.1ScaffoldLEEU00000000SAMN03566322
Pae_CF67.05q
GCA_001036805.1ScaffoldLEKD00000000SAMN03566461
Pae_CF67.12r
GCA_001036195.1ScaffoldLEIZ00000000SAMN03566431
Pae_CF67.11g
GCA_001036185.1ScaffoldLEIY00000000SAMN03566430
Pae_CF67.11f
GCA_001036155.1ScaffoldLEIX00000000SAMN03566429
Pae_CF67.11e
GCA_001036145.1ScaffoldLEIW00000000SAMN03566428
Pae_CF67.11d
GCA_001036105.1ScaffoldLEIU00000000SAMN03566426
Pae_CF67.11b
GCA_001036115.1ScaffoldLEIV00000000SAMN03566427
Pae_CF67.11c
GCA_001036065.1ScaffoldLEIS00000000SAMN03566424
Pae_CF67.10t
GCA_001036075.1ScaffoldLEIT00000000SAMN03566425
Pae_CF67.11a
GCA_001036035.1ScaffoldLEIR00000000SAMN03566423
Pae_CF67.10s
GCA_001036025.1ScaffoldLEIQ00000000SAMN03566422
Pae_CF67.10r
GCA_001036005.1ScaffoldLEIP00000000SAMN03566421
Pae_CF67.10q
GCA_001035975.1ScaffoldLEIO00000000SAMN03566420
Pae_CF67.10p
GCA_001035955.1ScaffoldLEIN00000000SAMN03566419
Pae_CF67.10o
GCA_001035945.1ScaffoldLEIM00000000SAMN03566418
Pae_CF67.10n
GCA_001035925.1ScaffoldLEIL00000000SAMN03566417
Pae_CF67.10m
GCA_001035885.1ScaffoldLEIK00000000SAMN03566416
Pae_CF67.10l
GCA_001035865.1ScaffoldLEII00000000SAMN03566414
Pae_CF67.10j
GCA_001035875.1ScaffoldLEIJ00000000SAMN03566415
Pae_CF67.10k
GCA_001035845.1ScaffoldLEIH00000000SAMN03566413
Pae_CF67.10i
GCA_001035805.1ScaffoldLEIG00000000SAMN03566412
Pae_CF67.10h
GCA_001035795.1ScaffoldLEIF00000000SAMN03566411
Pae_CF67.10g
GCA_001035785.1ScaffoldLEIE00000000SAMN03566410
Pae_CF67.10f
GCA_001035765.1ScaffoldLEID00000000SAMN03566409
Pae_CF67.10e
GCA_001035725.1ScaffoldLEIC00000000SAMN03566408
Pae_CF67.10d
GCA_001035715.1ScaffoldLEIB00000000SAMN03566407
Pae_CF67.10c
GCA_001035705.1ScaffoldLEIA00000000SAMN03566406
Pae_CF67.10b
GCA_001035685.1ScaffoldLEHZ00000000SAMN03566405
Pae_CF67.10a
GCA_001035635.1ScaffoldLEHX00000000SAMN03566403
Pae_CF67.09s
GCA_001035645.1ScaffoldLEHY00000000SAMN03566404
Pae_CF67.09t
GCA_001035625.1ScaffoldLEHW00000000SAMN03566402
Pae_CF67.09r
GCA_001035605.1ScaffoldLEHV00000000SAMN03566401
Pae_CF67.09q
GCA_001035575.1ScaffoldLEHU00000000SAMN03566400
Pae_CF67.09p
GCA_001035565.1ScaffoldLEHT00000000SAMN03566399
Pae_CF67.09o
GCA_001035535.1ScaffoldLEHS00000000SAMN03566398
Pae_CF67.09n
GCA_001035525.1ScaffoldLEHR00000000SAMN03566397
Pae_CF67.09m
GCA_001035495.1ScaffoldLEHQ00000000SAMN03566396
Pae_CF67.09l
GCA_001035485.1ScaffoldLEHP00000000SAMN03566395
Pae_CF67.09k
GCA_001035465.1ScaffoldLEHO00000000SAMN03566394
Pae_CF67.09j
GCA_001035445.1ScaffoldLEHN00000000SAMN03566393
Pae_CF67.09i
GCA_001035415.1ScaffoldLEHM00000000SAMN03566392
Pae_CF67.09h
GCA_001035395.1ScaffoldLEHL00000000SAMN03566391
Pae_CF67.09g
GCA_001035385.1ScaffoldLEHK00000000SAMN03566390
Pae_CF67.09f
GCA_001035365.1ScaffoldLEHJ00000000SAMN03566389
Pae_CF67.09e
GCA_001035325.1ScaffoldLEHH00000000SAMN03566387
Pae_CF67.09c
GCA_001035315.1ScaffoldLEHI00000000SAMN03566388
Pae_CF67.09d
GCA_001035305.1ScaffoldLEHG00000000SAMN03566386
Pae_CF67.09b
GCA_001035285.1ScaffoldLEHF00000000SAMN03566385
Pae_CF67.09a
GCA_001035245.1ScaffoldLEHE00000000SAMN03566384
Pae_CF67.08t
GCA_001035235.1ScaffoldLEHD00000000SAMN03566383
Pae_CF67.08s
GCA_001035225.1ScaffoldLEHC00000000SAMN03566382
Pae_CF67.08r
GCA_001035205.1ScaffoldLEHB00000000SAMN03566381
Pae_CF67.08q
GCA_001035175.1ScaffoldLEHA00000000SAMN03566380
Pae_CF67.08p
GCA_001035155.1ScaffoldLEGZ00000000SAMN03566379
Pae_CF67.08o
GCA_001035145.1ScaffoldLEGY00000000SAMN03566378
Pae_CF67.08n
GCA_001035115.1ScaffoldLEGX00000000SAMN03566377
Pae_CF67.08m
GCA_001035105.1ScaffoldLEGW00000000SAMN03566376
Pae_CF67.08l
GCA_001035075.1ScaffoldLEGV00000000SAMN03566375
Pae_CF67.08k
GCA_001023635.1ScaffoldLDKJ00000000SAMN03566254
Pae_CF67.02g
GCA_001023625.1ScaffoldLDKG00000000SAMN03566251
Pae_CF67.02d
GCA_001023615.1ScaffoldLDKL00000000SAMN03566256
Pae_CF67.02i
GCA_001024995.1ScaffoldLDMX00000000SAMN03566321
Pae_CF67.05p
GCA_001024955.1ScaffoldLDMW00000000SAMN03566320
Pae_CF67.05o
GCA_001024925.1ScaffoldLDMU00000000SAMN03566318
Pae_CF67.05m
GCA_001024945.1ScaffoldLDMV00000000SAMN03566319
Pae_CF67.05n
GCA_001024915.1ScaffoldLDMT00000000SAMN03566317
Pae_CF67.05l
GCA_001024845.1ScaffoldLDMQ00000000SAMN03566313
Pae_CF67.05h
GCA_001024875.1ScaffoldLDMS00000000SAMN03566316
Pae_CF67.05k
GCA_001024855.1ScaffoldLDMR00000000SAMN03566314
Pae_CF67.05i
GCA_001024835.1ScaffoldLDMP00000000SAMN03566312
Pae_CF67.05g
GCA_001024805.1ScaffoldLDMO00000000SAMN03566311
Pae_CF67.05f
GCA_001024765.1ScaffoldLDMM00000000SAMN03566309
Pae_CF67.05d
GCA_001024775.1ScaffoldLDMN00000000SAMN03566310
Pae_CF67.05e
GCA_001024755.1ScaffoldLDML00000000SAMN03566308
Pae_CF67.05c
GCA_001024715.1ScaffoldLDMJ00000000SAMN03566306
Pae_CF67.05a
GCA_001024725.1ScaffoldLDMK00000000SAMN03566307
Pae_CF67.05b
GCA_001024695.1ScaffoldLDMI00000000SAMN03566305
Pae_CF67.04t
GCA_001024645.1ScaffoldLDMD00000000SAMN03566300
Pae_CF67.04o
GCA_001024655.1ScaffoldLDMH00000000SAMN03566304
Pae_CF67.04s
GCA_001024635.1ScaffoldLDMC00000000SAMN03566299
Pae_CF67.04n
GCA_001024615.1ScaffoldLDLX00000000SAMN03566294
Pae_CF67.04i
GCA_001024585.1ScaffoldLDLW00000000SAMN03566293
Pae_CF67.04h
GCA_001024565.1ScaffoldLDLT00000000SAMN03566290
Pae_CF67.04e
GCA_001024545.1ScaffoldLDLQ00000000SAMN03566287
Pae_CF67.04b
GCA_001024535.1ScaffoldLDLP00000000SAMN03566286
Pae_CF67.04a
GCA_001024515.1ScaffoldLDLI00000000SAMN03566279
Pae_CF67.03l
GCA_001024495.1ScaffoldLDLH00000000SAMN03566278
Pae_CF67.03k
GCA_001024455.1ScaffoldLDLD00000000SAMN03566274
Pae_CF67.03g
GCA_001024435.1ScaffoldLDKY00000000SAMN03566269
Pae_CF67.03b
GCA_001024445.1ScaffoldLDKT00000000SAMN03566264
Pae_CF67.02q
GCA_001024395.1ScaffoldLDKM00000000SAMN03566257
Pae_CF67.02j
GCA_001024365.1ScaffoldLDKI00000000SAMN03566253
Pae_CF67.02f
GCA_001024375.1ScaffoldLDKK00000000SAMN03566255
Pae_CF67.02h
GCA_001024355.1ScaffoldLDMG00000000SAMN03566303
Pae_CF67.04r
GCA_001024325.1ScaffoldLDMF00000000SAMN03566302
Pae_CF67.04q
GCA_001024305.1ScaffoldLDMB00000000SAMN03566298
Pae_CF67.04m
GCA_001024275.1ScaffoldLDLZ00000000SAMN03566296
Pae_CF67.04k
GCA_001024285.1ScaffoldLDMA00000000SAMN03566297
Pae_CF67.04l
GCA_001024235.1ScaffoldLDLU00000000SAMN03566291
Pae_CF67.04f
GCA_001024215.1ScaffoldLDLR00000000SAMN03566288
Pae_CF67.04c
GCA_001024205.1ScaffoldLDLO00000000SAMN03566285
Pae_CF67.03r
GCA_001024195.1ScaffoldLDLN00000000SAMN03566284
Pae_CF67.03q
GCA_001024145.1ScaffoldLDLL00000000SAMN03566282
Pae_CF67.03o
GCA_001024125.1ScaffoldLDLF00000000SAMN03566276
Pae_CF67.03i
GCA_001024135.1ScaffoldLDLJ00000000SAMN03566280
Pae_CF67.03m
GCA_001024115.1ScaffoldLDLE00000000SAMN03566275
Pae_CF67.03h
GCA_001024075.1ScaffoldLDLC00000000SAMN03566273
Pae_CF67.03f
GCA_001024065.1ScaffoldLDLB00000000SAMN03566272
Pae_CF67.03e
GCA_001024055.1ScaffoldLDLA00000000SAMN03566271
Pae_CF67.03d
GCA_001024035.1ScaffoldLDKW00000000SAMN03566267
Pae_CF67.02t
GCA_001023995.1ScaffoldLDKU00000000SAMN03566265
Pae_CF67.02r
GCA_001023985.1ScaffoldLDKR00000000SAMN03566262
Pae_CF67.02o
GCA_001023975.1ScaffoldLDKS00000000SAMN03566263
Pae_CF67.02p
GCA_001023955.1ScaffoldLDKQ00000000SAMN03566261
Pae_CF67.02n
GCA_001023925.1ScaffoldLDKH00000000SAMN03566252
Pae_CF67.02e
GCA_001023915.1ScaffoldLDME00000000SAMN03566301
Pae_CF67.04p
GCA_001023895.1ScaffoldLDLY00000000SAMN03566295
Pae_CF67.04j
GCA_001023875.1ScaffoldLDLV00000000SAMN03566292
Pae_CF67.04g
GCA_001023845.1ScaffoldLDLS00000000SAMN03566289
Pae_CF67.04d
GCA_001023835.1ScaffoldLDLM00000000SAMN03566283
Pae_CF67.03p
GCA_001023815.1ScaffoldLDLK00000000SAMN03566281
Pae_CF67.03n
GCA_001023775.1ScaffoldLDLG00000000SAMN03566277
Pae_CF67.03j
GCA_001023755.1ScaffoldLDKX00000000SAMN03566268
Pae_CF67.03a
GCA_001023765.1ScaffoldLDKZ00000000SAMN03566270
Pae_CF67.03c
GCA_001023735.1ScaffoldLDKV00000000SAMN03566266
Pae_CF67.02s
GCA_001023685.1ScaffoldLDKO00000000SAMN03566259
Pae_CF67.02l
GCA_001023705.1ScaffoldLDKP00000000SAMN03566260
Pae_CF67.02m
GCA_001023675.1ScaffoldLDKN00000000SAMN03566258
Pae_CF67.02k

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