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Accession: PRJNA281759 ID: 281759

Homo sapiens (human)

Impact of flanking chromosomal sequences on localization and silencing by the ncRNA XIST

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We performed RNA-seq and ChIP-seq on clones of human cell lines carrying an inducible XIST transgene on 1p, 8p, or 12q to study the effects of allelic silencing in cis Overall design: Total gene expression and allelic changes were examined in HT1080 clones carrying an inducible XIST transgene on 1p, 8p, or 12q after induction by doxycycline. More...
AccessionPRJNA281759; GEO: GSE68109
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsKelsey AD et al., "Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST.", Genome Biol, 2015 Oct 2;16:208
SubmissionRegistration date: 21-Apr-2015
Brown Lab, Medical Genetics, University of British Columbia
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments16
Publications
PubMed1
PMC1
Other datasets
BioSample16
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes2
SRA Data Details
ParameterValue
Data volume, Gbases46
Data volume, Mbytes27616

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