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Accession: PRJNA281110 ID: 281110

Vitis

Vitis Genome sequencing and assembly

In the Vitisgen project, grape germplasm possessing genetic background from several species from the genus Vitis are being studied. More...
AccessionPRJNA281110
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismVitis[Taxonomy ID: 3603]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Publications
  • Oh JM et al., "U1 snRNP regulates cancer cell migration and invasion in vitro.", Nat Commun, 2020 Jan 7;11(1):1
  • Hyma KE et al., "Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine.", PLoS One, 2015;10(8):e0134880
Grants
  • "Accelerating grape cultivar improvement via phenotyping centers and next generation markers" (Grant ID 2011-51181-30635, United States Department of Agriculture-National Institute of Food and Agriculture, Specialty Crop Research Initiative)
SubmissionRegistration date: 8-Feb-2022
VitisGen
- Cornell University
Related Resources
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)7
SRA Experiments2350
Publications
PubMed2
PMC2
Other datasets
BioSample2339
Assembly7
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases1,158
Data volume, Tbytes0.54

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