We used CAGE (Cap Analysis of Gene Expression) to comprehensively map transcription start sites (TSSs) across different etiologies of human HCC as well as mouse HCC, with particular emphasis on ncRNAs distant from protein-coding genes. CAGE-Seq data of 105 human and 37 mouse hepatocellular carcinoma samples were studied.
| Accession | PRJNA279275 |
| Type | Umbrella project |
| Submission | Registration date: 24-Mar-2015
RIKEN Center for Life Science Technologies |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 142 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 142 |
| Genotype and Phenotype (dbGaP) | 1 |
| GEO DataSets | 1 |
This project encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
| Phenotype or Genotype | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA278792 | Homo sapiens | CAGE profiling of ncRNAs in hepatocellular carcinoma reveals a strong activation of retroviral LTR promoters in virus-induced tumors (RIKEN Center for Life Science...) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA260033 | Mus musculus | Transcriptome of hepatocellular carcinoma using CAGE (CLST, RIKEN) |
|