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Accession: PRJNA245882 ID: 245882

Vibrio parahaemolyticus

Vibrio parahaemolyticus GenomeTrakr - US Food and Drug Administration, Center for Food Safety and Applied Nutrition

See Genome Information for Vibrio parahaemolyticus
Currently encompasses whole genome sequencing of cultured Vibrio parahaemolyticus as part of a surveillance project for the rapid detection foodborne illness outbreaks.
AccessionPRJNA245882
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismVibrio parahaemolyticus[Taxonomy ID: 670]
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio parahaemolyticus
Publications (total 6)
  • Gonzalez-Escalona N et al., "Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus.", J Clin Microbiol, 2017 Mar 22;55(6):1682-1697
More...
SubmissionRegistration date: 28-Apr-2016
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7871
WGS master125
SRA Experiments375
Protein Sequences574181
Publications
PubMed6
PMC6
Other datasets
BioSample379
Assembly125
Assembly details:
Assembly levelNumber of Assemblies
8
117
125
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000701045.2ContigJFFP00000000SAMN02252525
CFSAN001595
GCA_001998785.1ContigMQUE00000000SAMN06076928
ATCC 17802
GCA_002072925.1ContigLHQW00000000SAMN01816334
NY3547
GCA_002072915.1ContigLHQV00000000SAMN03945127
CFSAN001621
GCA_002072885.1ContigLHPD00000000SAMN02741352
CFSAN001615
GCA_002072875.1ContigMRVB00000000SAMN06115931
CFSAN026729
GCA_002072845.1ContigLHPE00000000SAMN02741353
CFSAN001616
GCA_002072835.1ContigMRVC00000000SAMN06115936
CFSAN026730
GCA_000706985.2ContigJNTL00000000SAMN02741391
CFSAN007455
GCA_000707105.2ContigJNTA00000000SAMN02741379
CFSAN007443
GCA_000707305.2ContigJNSZ00000000SAMN02741378
CFSAN007442
GCA_000706945.2ContigJNSY00000000SAMN02741377
CFSAN007441
GCA_000707005.2ContigJNSX00000000SAMN02741376
CFSAN007440
GCA_000707145.2ContigJNSV00000000SAMN02741374
CFSAN007438
GCA_000707165.2ContigJNSU00000000SAMN02741373
CFSAN007437
GCA_000707465.2ContigJNSQ00000000SAMN02741369
CFSAN007433
GCA_000707725.2ContigJNTF00000000SAMN02741384
CFSAN007448
GCA_000707705.2ContigJNTE00000000SAMN02741383
CFSAN007447
GCA_000707685.2ContigJNTD00000000SAMN02741382
CFSAN007446
GCA_000707125.2ContigJNTC00000000SAMN02741381
CFSAN007445
GCA_000707065.2ContigJNTB00000000SAMN02741380
CFSAN007444
GCA_000707025.2ContigJNSW00000000SAMN02741375
CFSAN007439
GCA_000706885.2ContigJNST00000000SAMN02741372
CFSAN007436
GCA_000707505.2ContigJNSS00000000SAMN02741371
CFSAN007435
GCA_000707485.2ContigJNSR00000000SAMN02741370
CFSAN007434
GCA_000707445.2ContigJNSP00000000SAMN02741368
CFSAN007432
GCA_000707385.2ContigJNSO00000000SAMN02741367
CFSAN007431
GCA_000707425.2ContigJNSN00000000SAMN02741366
CFSAN007430
GCA_000707405.2ContigJNSM00000000SAMN02741365
CFSAN007429
GCA_000706905.2ContigJNTU00000000SAMN02741398
CFSAN007462
GCA_000706965.2ContigJNTS00000000SAMN02741396
CFSAN007460
GCA_000707325.2ContigJNTN00000000SAMN02741360
CFSAN006131
GCA_000707205.2ContigJNTT00000000SAMN02741397
CFSAN007461
GCA_000706865.2ContigJNTR00000000SAMN02741364
CFSAN006135
GCA_000706845.2ContigJNTQ00000000SAMN02741363
CFSAN006134
GCA_000706925.2ContigJNTV00000000SAMN02741359
CFSAN006130
GCA_000707865.2ContigJNTP00000000SAMN02741362
CFSAN006133
GCA_000707845.2ContigJNTO00000000SAMN02741361
CFSAN006132
GCA_000707225.2ContigJNTM00000000SAMN02741358
CFSAN006129
GCA_000707605.2ContigJNUE00000000SAMN01816336
98-513-F52
GCA_000707625.2ContigJNUF00000000SAMN02741350
CFSAN001613
GCA_000707585.2ContigJNUD00000000SAMN01816333
K1203
GCA_000707525.2ContigJNUA00000000SAMN02741355
CFSAN001618
GCA_000707565.2ContigJNUC00000000SAMN02741357
CFSAN001620
GCA_000707545.2ContigJNUB00000000SAMN02741356
CFSAN001619
GCA_000707885.2ContigJNTY00000000SAMN02741351
CFSAN001614
GCA_000707245.2ContigJNTZ00000000SAMN02741354
CFSAN001617
GCA_000706825.2ContigJNTX00000000SAMN02741349
CFSAN001612
GCA_000707045.2ContigJNTW00000000SAMN02741348
CFSAN001611
GCA_002198075.1ContigLHRB00000000SAMN03945132
CFSAN001603
GCA_002198055.1ContigLHRA00000000SAMN03945131
CFSAN001604
GCA_002198615.1ContigLHRW00000000SAMN03945153
CFSAN022336
GCA_002198565.1ContigLHRT00000000SAMN03945150
CFSAN022332
GCA_002198575.1ContigLHRV00000000SAMN03945152
CFSAN022335
GCA_002198555.1ContigLHRS00000000SAMN03945149
CFSAN022331
GCA_002198525.1ContigLHRQ00000000SAMN03945147
CFSAN018777
GCA_002198515.1ContigLHRO00000000SAMN03945145
CFSAN018774
GCA_002198485.1ContigLHRL00000000SAMN03945142
CFSAN018771
GCA_002198475.1ContigLHRR00000000SAMN03945148
CFSAN022330
GCA_002198445.1ContigLHRU00000000SAMN03945151
CFSAN022334
GCA_002198435.1ContigLHRN00000000SAMN03945144
CFSAN018773
GCA_002198415.1ContigLHRK00000000SAMN03945141
CFSAN018770
GCA_002198395.1ContigLHRP00000000SAMN03945146
CFSAN018775
GCA_002198375.1ContigLHRJ00000000SAMN03945140
CFSAN018769
GCA_002198355.1ContigLHRM00000000SAMN03945143
CFSAN018772
GCA_002198335.1ContigLHRD00000000SAMN03945134
CFSAN001600
GCA_002198295.1ContigLHRC00000000SAMN03945133
CFSAN001599
GCA_002198305.1ContigLHRH00000000SAMN03945138
CFSAN001597
GCA_002198275.1ContigLHQZ00000000SAMN03945130
CFSAN001602
GCA_002198255.1ContigLHRI00000000SAMN03945139
CFSAN018768
GCA_002198215.1ContigLHQX00000000SAMN03945128
CFSAN001598
GCA_002198175.1ContigLHRF00000000SAMN03945136
CFSAN001605
GCA_002198195.1ContigLHQY00000000SAMN03945129
CFSAN001607
GCA_002198185.1ContigLHRG00000000SAMN03945137
CFSAN001608
GCA_002198135.1ContigLHRE00000000SAMN03945135
CFSAN001606
GCA_001696225.1ContigLHBJ00000000SAMN03941075
CFSAN018767
GCA_001696215.1ContigLHBI00000000SAMN03941074
CFSAN018766
GCA_001696155.1ContigLHBE00000000SAMN03941070
CFSAN018762
GCA_001696145.1ScaffoldLHBG00000000SAMN03941072
CFSAN018764
GCA_001696165.1ContigLHBH00000000SAMN03941073
CFSAN018765
GCA_001696135.1ScaffoldLHBF00000000SAMN03941071
CFSAN018763
GCA_001696115.1ContigLHBB00000000SAMN03941067
CFSAN001174
GCA_001696085.1ContigLHBC00000000SAMN03941068
CFSAN018760
GCA_001696065.1ContigLHBD00000000SAMN03941069
CFSAN018761
GCA_001696055.1ContigLHBA00000000SAMN03941066
CFSAN018758
GCA_001696015.1ContigLHAZ00000000SAMN03941065
CFSAN018757
GCA_001696005.1ContigLHAY00000000SAMN03941064
CFSAN018756
GCA_001695995.1ContigLHAV00000000SAMN03941061
CFSAN018753
GCA_001695955.1ContigLHAU00000000SAMN03941060
CFSAN018752
GCA_001695935.1ContigLHAX00000000SAMN03941063
CFSAN018755
GCA_001695945.1ContigLHAW00000000SAMN03941062
CFSAN018754
GCA_000707085.2ContigJNUL00000000SAMN02741393
CFSAN007457
GCA_000707905.2ContigJNUO00000000SAMN02741390
CFSAN007454
GCA_000707285.2ContigJNUK00000000SAMN02741392
CFSAN007456
GCA_000707825.2ContigJNTK00000000SAMN02741389
CFSAN007453
GCA_000707785.2ContigJNTJ00000000SAMN02741388
CFSAN007452
GCA_000707365.2ContigJNUM00000000SAMN02741394
CFSAN007458
GCA_000707805.2ContigJNTI00000000SAMN02741387
CFSAN007451
GCA_000707745.2ContigJNTG00000000SAMN02741385
CFSAN007449
GCA_000707765.2ContigJNTH00000000SAMN02741386
CFSAN007450
GCA_000707265.2ContigJNUI00000000SAMN02741401
CFSAN012493
GCA_000707345.2ContigJNUJ00000000SAMN02741402
CFSAN012494
GCA_000707665.2ScaffoldJNUH00000000SAMN02741400
CFSAN012492
GCA_000707645.2ScaffoldJNUG00000000SAMN02741399
CFSAN012491
GCA_000707185.2ContigJNUN00000000SAMN02741395
CFSAN007459
GCA_001634035.1ContigLKQT00000000SAMN04145934
CFSAN029656
GCA_001634015.1ScaffoldLKQI00000000SAMN04145923
CFSAN025060
GCA_001633995.1ContigLKQM00000000SAMN04145927
CFSAN025064
GCA_001633985.1ContigLKQH00000000SAMN04145922
CFSAN025059
GCA_001633955.1ContigLKQS00000000SAMN04145933
CFSAN029654
GCA_001633935.1ContigLKQR00000000SAMN04145932
CFSAN029653
GCA_001633915.1ContigLKQQ00000000SAMN04145931
CFSAN025068
GCA_001633905.1ContigLKQP00000000SAMN04145930
CFSAN025067
GCA_001633855.1ContigLKQO00000000SAMN04145929
CFSAN025066
GCA_001633845.1ContigLKQL00000000SAMN04145926
CFSAN025063
GCA_001633835.1ContigLKQN00000000SAMN04145928
CFSAN025065
GCA_001633825.1ContigLKQK00000000SAMN04145925
CFSAN025062
GCA_001634245.1ScaffoldLKQJ00000000SAMN04145924
CFSAN025061
GCA_001634215.1ContigLKQG00000000SAMN04145921
CFSAN025058
GCA_001634205.1ContigLKQF00000000SAMN04145920
CFSAN025057
GCA_001634185.1ContigLKQE00000000SAMN04145919
CFSAN025056
GCA_001634165.1ScaffoldLKQA00000000SAMN04145916
CFSAN025053
GCA_001634135.1ContigLKQB00000000SAMN04145915
CFSAN025052
GCA_001634125.1ScaffoldLKQD00000000SAMN04145918
CFSAN025055
GCA_001634105.1ContigLKQC00000000SAMN04145917
CFSAN025054
SRA Data Details
ParameterValue
Data volume, Gbases152
Data volume, Tbytes0.12

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    Vibrio parahaemolyticus GenomeTrakr - US Food and Drug Administration, Center for Food Safety and Applied Nutrition
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