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Accession: PRJEB2589 ID: 204298

Genome diversity of spatially distinct Streptococcus agalactiae

"Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. More...
AccessionPRJEB2589
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsDa Cunha V et al., "Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.", Nat Commun, 2014 Aug 4;5:4544
SubmissionRegistration date: 21-May-2013
SC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3131
WGS master117
SRA Experiments126
Protein Sequences238028
Publications
PubMed1
PMC1
Other datasets
BioSample126
Assembly117
Assembly details:
Assembly levelNumber of Assemblies
92
25
117
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001349055.1ContigCGBQ00000000SAMEA1031533
RBH03
GCA_001349035.1ContigCGCF00000000SAMEA1031532
B37VS
GCA_001349015.1ScaffoldCGGK00000000SAMEA1031511
DK-NI-008
GCA_001348995.1ScaffoldCGBY00000000SAMEA1031509
IT-NI-016
GCA_001348975.1ScaffoldCHYW00000000SAMEA1031508
BG-NI-007
GCA_001348955.1ScaffoldCIJL00000000SAMEA1031507
CZ-NI-013
GCA_001348935.1ScaffoldCGCL00000000SAMEA1031505
IT-NI-020
GCA_001348915.1ScaffoldCGBZ00000000SAMEA1031494
DE-NI-014
GCA_001348895.1ScaffoldCHYX00000000SAMEA1031489
BE-NI-005
GCA_001348875.1ScaffoldCHDP00000000SAMEA1031487
IT-NI-019
GCA_001348855.1ScaffoldCIJH00000000SAMEA1031479
DK-NI-005
GCA_001348835.1ScaffoldCGBF00000000SAMEA1031466
IT-NI-007
GCA_001348815.1ScaffoldCGBT00000000SAMEA1031464
DE-NI-012
GCA_001348795.1ScaffoldCHZB00000000SAMEA1031459
IT-NI-037
GCA_001348775.1ScaffoldCGCD00000000SAMEA1031455
DK-NI-012
GCA_001348755.1ScaffoldCHZE00000000SAMEA1031450
IT-NI-008
GCA_001348735.1ContigCGHZ00000000SAMEA1031448
RBH06
GCA_001348715.1ContigCHDM00000000SAMEA1031442
B96V
GCA_001348695.1ScaffoldCHDT00000000SAMEA1031440
DK-NI-013
GCA_001348675.1ScaffoldCHYR00000000SAMEA1031435
DK-NI-015
GCA_001348655.1ContigCHDL00000000SAMEA1031427
B50VS
GCA_001348635.1ScaffoldCFLB00000000SAMEA1031426
BG-NI-004
GCA_001348615.1ContigCHDK00000000SAMEA1031418
B24VD
GCA_001348595.1ScaffoldCGCK00000000SAMEA1031417
DK-NI-010
GCA_001348575.1ScaffoldCGCE00000000SAMEA1031416
CZ-NI-007
GCA_001348555.1ScaffoldCHJW00000000SAMEA1031415
BG-NI-011
GCA_001348535.1ContigCGBG00000000SAMEA1031412
B41VS
GCA_001166505.1ScaffoldCQEW00000000SAMEA1031530
DE-NI-0019
GCA_001173205.1ScaffoldCQDX00000000SAMEA1031444
RBH05
GCA_001171645.1ContigCPVY00000000SAMEA1031504
RBH01
GCA_001174785.1ScaffoldCPXY00000000SAMEA1031446
IT-NI-028
GCA_001164665.1ScaffoldCPYH00000000SAMEA1031496
CZ-NI-014
GCA_001166605.1ContigCPZY00000000SAMEA1031439
B15VD
GCA_001163105.1ScaffoldCQCS00000000SAMEA1031472
DK-NI-001
GCA_001162445.1ScaffoldCQAV00000000SAMEA1031434
DE-NI-032
GCA_001160905.1ScaffoldCPWV00000000SAMEA1031469
IT-NI-036
GCA_001162145.1ScaffoldCQCN00000000SAMEA1031453
DE-NI-033
GCA_001159365.1ScaffoldCPZV00000000SAMEA1031474
DK-NI-011
GCA_001155125.1ScaffoldCPXV00000000SAMEA1031443
DE-NI-0013
GCA_001156365.1ScaffoldCQEL00000000SAMEA1031498
DK-NI-014
GCA_001155785.1ScaffoldCPWW00000000SAMEA1031481
CZ-NI-015
GCA_001155905.1ScaffoldCPVB00000000SAMEA1031537
CZ-NI-006
GCA_001156965.1ContigCQCM00000000SAMEA1031456
B09PS
GCA_001223485.1ScaffoldCTKF00000000SAMEA1031480
GB-NI-009
GCA_001222685.1ScaffoldCTEY00000000SAMEA1031451
GB-NI-014
GCA_001222545.1ScaffoldCTFP00000000SAMEA1031422
GB-NI-005
GCA_001221825.1ScaffoldCTKP00000000SAMEA1031522
GB-NI-007
GCA_001221965.1ScaffoldCTIX00000000SAMEA1031428
GB-NI-003
GCA_001222045.1ScaffoldCTIS00000000SAMEA1031414
GB-NI-004
GCA_001221525.1ScaffoldCTKW00000000SAMEA1031500
GB-NI-011
GCA_001221465.1ScaffoldCTJD00000000SAMEA1031468
GB-NI-015
GCA_001218945.1ScaffoldCTIW00000000SAMEA1031497
GB-NI-010
GCA_001217725.1ScaffoldCTKT00000000SAMEA1031431
GB-NI-002
GCA_001218205.1ScaffoldCTRF00000000SAMEA1031510
GB-NI-006
GCA_001091485.1ScaffoldCPXG00000000SAMEA1031477
DK-NI-022
GCA_001089905.1ScaffoldCPVL00000000SAMEA1031420
DE-NI-007
GCA_001093745.1ScaffoldCQBE00000000SAMEA1031433
DK-NI-009
GCA_001097365.1ScaffoldCQBS00000000SAMEA1031483
CZ-NI-002
GCA_001099185.1ScaffoldCQDN00000000SAMEA1031447
CZ-NI-001
GCA_001098005.1ScaffoldCPYN00000000SAMEA1031529
BG-NI-010
GCA_001098165.1ScaffoldCQEF00000000SAMEA1031430
DK-NI-003
GCA_001100165.1ScaffoldCPXO00000000SAMEA1031517
DK-NI-016
GCA_001101765.1ScaffoldCPVU00000000SAMEA1031501
DE-NI-003
GCA_001102825.1ScaffoldCPZX00000000SAMEA1031432
BG-NI-005
GCA_001102725.1ScaffoldCQAB00000000SAMEA1031515
CZ-NI-004
GCA_001087245.1ScaffoldCQAI00000000SAMEA1031484
DE-NI-0017
GCA_001088105.1ScaffoldCQEQ00000000SAMEA1031524
CZ-NI-005
GCA_001088005.1ScaffoldCPXP00000000SAMEA1031495
CZ-NI-003
GCA_001086185.1ContigCQCR00000000SAMEA1031486
RBH02
GCA_001142165.1ScaffoldCPWP00000000SAMEA1031519
DE-NI-042
GCA_001142125.1ScaffoldCPXM00000000SAMEA1031536
IT-NI-003
GCA_001145805.1ScaffoldCPWF00000000SAMEA1031523
IT-NI-018
GCA_001145265.1ContigCQBZ00000000SAMEA1031512
RBH04
GCA_001146845.1ContigCPYV00000000SAMEA1031470
CZ-NI-016
GCA_001146325.1ScaffoldCQDV00000000SAMEA1031419
IT-NI-033
GCA_001147785.1ContigCPZB00000000SAMEA1031516
B42VD
GCA_001147165.1ScaffoldCQBC00000000SAMEA1031521
CZ-NI-010
GCA_001149385.1ContigCQDY00000000SAMEA1031518
RBH11
GCA_001151005.1ContigCQAD00000000SAMEA1031478
RBH08
GCA_001152205.1ScaffoldCQDE00000000SAMEA1031499
DE-NI-041
GCA_001153505.1ScaffoldCPZR00000000SAMEA1031485
DK-NI-004
GCA_001130545.1ScaffoldCQCG00000000SAMEA1031527
BG-NI-009
GCA_001133525.1ScaffoldCQES00000000SAMEA1031467
IT-NI-032
GCA_001133625.1ScaffoldCPYK00000000SAMEA1031445
BG-NI-003
GCA_001134425.1ScaffoldCPXW00000000SAMEA1031492
BG-NI-006
GCA_001134625.1ScaffoldCPVR00000000SAMEA1031476
DE-NI-037
GCA_001135525.1ScaffoldCQBL00000000SAMEA1031506
BE-NI-001
GCA_001138645.1ScaffoldCPVM00000000SAMEA1031463
DE-NI-036
GCA_001140565.1ScaffoldCPVH00000000SAMEA1031438
CZ-NI-008
GCA_001140025.1ScaffoldCQDH00000000SAMEA1031437
DE-NI-006
GCA_001110405.1ScaffoldCQCI00000000SAMEA1031488
DE-NI-001
GCA_001109825.1ContigCPXU00000000SAMEA1031471
B81VD
GCA_001110105.1ContigCPZW00000000SAMEA1031473
RBH07
GCA_001111745.1ContigCQDG00000000SAMEA1031457
B81VS
GCA_001115545.1ContigCPVQ00000000SAMEA1031531
RBH12
GCA_001115485.1ScaffoldCPVG00000000SAMEA1031493
DE-NI-040
GCA_001114925.1ScaffoldCPVO00000000SAMEA1031482
BE-NI-007
GCA_001108745.1ScaffoldCPVS00000000SAMEA1031525
DK-NI-021
GCA_001108625.1ScaffoldCQDD00000000SAMEA1031452
IT-NI-0031
GCA_001109505.1ContigCPWB00000000SAMEA1031502
RBH09
GCA_001106525.1ScaffoldCPZS00000000SAMEA1031424
IT-NI-009
GCA_001104505.1ContigCQCY00000000SAMEA1031528
B96P
GCA_001104145.1ScaffoldCPVV00000000SAMEA1031520
DE-NI-022
GCA_001103625.1ScaffoldCPVW00000000SAMEA1031423
IT-NI-034
GCA_001103585.1ScaffoldCQDP00000000SAMEA1031503
BG-NI-001
GCA_001116525.1ScaffoldCQCW00000000SAMEA1031526
DK-NI-007
GCA_001118625.1ScaffoldCPXX00000000SAMEA1031461
BE-NI-008
GCA_001119085.1ScaffoldCPXA00000000SAMEA1031449
DK-NI-002
GCA_001119265.1ScaffoldCQDW00000000SAMEA1031513
DE-NI-004
GCA_001127125.1ContigCPXT00000000SAMEA1031441
B68VD
GCA_001127665.1ScaffoldCQDA00000000SAMEA1031535
CZ-NI-009
GCA_001123605.1ScaffoldCPYR00000000SAMEA1031514
DK-NI-019
GCA_001123205.1ScaffoldCPWS00000000SAMEA1031462
BG-NI-002
GCA_001124925.1ScaffoldCQBY00000000SAMEA1031465
DE-NI-010
GCA_001124065.1ContigCQDB00000000SAMEA1031491
B50VD
GCA_001123965.1ScaffoldCQDC00000000SAMEA1031425
BG-NI-012
GCA_900990975.1ContigCAAIMK000000000SAMEA1031413
HKU30
SRA Data Details
ParameterValue
Data volume, Gbases81
Data volume, Mbytes43668

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