Opitutus terrae PB90-1 (ID 19989) - BioProject

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Accession: PRJNA19989 ID: 19989

Opitutus terrae PB90-1

See Genome Information for Opitutus terrae

Opitutus terrae PB90-1. Opitutus terrae PB90-1 will be used for comparative genomics with other Verrucomicrobia.

Accession	PRJNA19989
Data Type	Genome sequencing
Scope	Monoisolate
Organism	Opitutus terrae PB90-1[Taxonomy ID: 452637] Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus; Opitutus terrae; Opitutus terrae PB90-1
Publications	van Passel MW et al., "Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.", J Bacteriol, 2011 May;193(9):2367-8
Submission	Registration date: 8-Apr-2008 US DOE Joint Genome Institute - DOE Joint Genome Institute
Locus Tag Prefix	OTER

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	1
SRA Experiments	3
Capillary Traces (Trace Archive)	1
Protein Sequences	4612
Publications
PubMed	1
PMC	1
Other datasets
BioSample	2
Assembly	1

Assembly	Level	Chrs	BioSample	Taxonomy
GCA_000019965.1	Complete genome	1	SAMN00000285	Opitutus terrae PB90-1

Parameter	Value
Data volume, Mbases	118
Data volume, Mbytes	1799

Supplemental Content

GOLD: Gp0001761 [Genomes On Line Database]
GOLD: Gp0001761
Genomes On Line Database
641522643: Opitutus terrae PB90-1 [Integrated Microbial Genomes]
641522643: Opitutus terrae PB90-1
Integrated Microbial Genomes
RDP Identifier: 19989 [Ribosomal Database Project II]
RDP Identifier: 19989
Ribosomal Database Project II
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

hot springs metagenome
hot springs metagenome
Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.B22.double-peak metagenome

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Opitutus terrae PB90-1
Opitutus terrae PB90-1
Rice paddy soil bacterium

BioProject
leaf litter metagenome
leaf litter metagenome
Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409C-1 metagenome

BioProject
freshwater metagenome
freshwater metagenome
Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J12 metagenome

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Homo sapiens
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