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Accession: PRJNA186441 ID: 186441

100K Food Pathogen Project

In the Genome Project for Food Pathogens project, FDA has partnered with U.C. Davis and Agilent to map the DNA of 100,000 pathogen strains to stop foodborne illness outbreaks faster.
AccessionPRJNA186441
TypeUmbrella project (Subtype:Disease)
KeywordGMI
SubmissionRegistration date: 11-Jan-2013
100K Genome Project
CDC
NCBI Links
Related Resources
RelevanceMedical, Industrial
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)566477
WGS master2068
Genomic DNA20
SRA Experiments4712
Protein Sequences1654049
Publications
PubMed3
PMC3
Other datasets
BioSample5211
Assembly2081
SRA Data Details
ParameterValue
Data volume, Gbases5,096
Data volume, Tbytes2.68
100K Food Pathogen Project encompasses the following 2 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
Contigs
Total

1
1
2
BioProject
accession
Assembly
level
NameTitle
PRJNA203445 Complete genomeBacteriaMajor food bacterial pathogens in the united states and around the world, including Salmonella enterica, E. coli, Shigella, Listeria monocytogenes, Campylobacter Jejuni, and Vibrio parahaemolyticus genome sequencing (University of California...)
PRJNA209204 ContigsFDA CFSAN, 100K Genome ProjectFDA CFSAN, 100K Genome Project (University of California...)

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