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2 additional projects are components of the Biofilm microbial community from UBA acid mine drainage site at Iron Mountain, California..
Samples of pink biofilm and associated acid mine drainage were collected from the Richmond Mine, Iron Mountain, CA, from the Ultra Back A (UBA) site in June 2005.
More...Samples of pink biofilm and associated acid mine drainage were collected from the Richmond Mine, Iron Mountain, CA, from the Ultra Back A (UBA) site in June 2005. Iron Mountain is located at 40 deg 40' 38.42'' N and 122 deg 31' 19.90'' W (elevation ~ 3,100 ft). The UBA biofilm was subaerial, collected from the base of a ~2 m high pile of pyrite sediment over which pH 1.1, 41 deg C acid mine drainage solution was flowing.
The first version of this project has a partial genome of Leptospirillum rubarum that dominates this biofilm (Genome Project 18795). A second partial genome from Leptospirillum ferrodiazotrophum is present in Genome Project 37907.
The WGS project and sequences deposited into the Trace Archive can be found using the Project data link. Less...
| Accession | PRJNA18537 |
| Data Type | Genome sequencing and assembly |
| Scope | Environment |
| Organism | mine drainage metagenome[Taxonomy ID: 410659] unclassified sequences; metagenomes; ecological metagenomes; mine drainage metagenome |
| Publications (total 3) Less... | - Goltsman DS et al., "Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.", Appl Environ Microbiol, 2009 Jul;75(13):4599-615
More...- Goltsman DS et al., "Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.", Appl Environ Microbiol, 2009 Jul;75(13):4599-615
- Dick GJ et al., "Community-wide analysis of microbial genome sequence signatures.", Genome Biol, 2009;10(8):R85
- Lo I et al., "Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.", Nature, 2007 Mar 29;446(7135):537-41
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| Submission | Registration date: 25-Jan-2007
|
| NCBI Links | |
| Locus Tag Prefix | NULL |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 229 |
| WGS master | 2 |
| SRA Experiments | 2 |
| Capillary Traces (Trace Archive) | 1 |
| Publications |
| PubMed | 3 |
| PMC | 2 |
| Other datasets |
| BioSample | 2 |
| Assembly | 1 |
Related Project Category: Same Sample
PRJNA18795 : Leptospirillum rubarum metagenomic assembly
PRJNA37907 : Leptospirillum ferrodiazotrophum metagenomic assembly