This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA174858; GEO: GSE40540 |
| Type | Umbrella project |
| Publications (total 3) Less... | - Thomson JP et al., "DNA immunoprecipitation semiconductor sequencing (DIP-SC-seq) as a rapid method to generate genome wide epigenetic signatures.", Sci Rep, 2015 May 14;5:9778
More...- Thomson JP et al., "DNA immunoprecipitation semiconductor sequencing (DIP-SC-seq) as a rapid method to generate genome wide epigenetic signatures.", Sci Rep, 2015 May 14;5:9778
- Thomson JP et al., "Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.", Nucleic Acids Res, 2013 Jun;41(11):5639-54
- Thomson JP et al., "Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome.", Genome Biol, 2012 Oct 3;13(10):R93
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| Submission | Registration date: 31-Aug-2012
Meehan, MRC Human Genetics Unit, University of Edinburgh |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 24 |
| Publications |
| PubMed | 3 |
| PMC | 3 |
| Other datasets |
| BioSample | 24 |
| GEO DataSets | 12 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 167602189 |
| Data volume, Processed Mbytes | 5636 |
| Data volume, Supplementary Mbytes | 8475 |
| Parameter | Value |
|---|
| Data volume, Gbases | 74 |
| Data volume, Mbytes | 48335 |
IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers encompasses the following 11 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 9 |
BioProject
accession | Organism | Title |
|---|
| PRJNA174863 | Mus musculus | IP of 5-hydroxymethylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (28 day) (Meehan, MRC Human Genetics...) | | PRJNA174864 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (28 day) (Meehan, MRC Human Genetics...) | | PRJNA179297 | Mus musculus | IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (7 day) (Meehan, MRC Human Genetics...) | | PRJNA179298 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (7 day) (Meehan, MRC Human Genetics...) | | PRJNA179299 | Mus musculus | IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (1 day) (Meehan, MRC Human Genetics...) |
List all 9 'Epigenomics' projects...BioProject
accession | Organism | Title |
|---|
| PRJNA174863 | Mus musculus | IP of 5-hydroxymethylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (28 day) (Meehan, MRC Human Genetics...) | | PRJNA174864 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (28 day) (Meehan, MRC Human Genetics...) | | PRJNA179297 | Mus musculus | IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (7 day) (Meehan, MRC Human Genetics...) | | PRJNA179298 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (7 day) (Meehan, MRC Human Genetics...) | | PRJNA179299 | Mus musculus | IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (1 day) (Meehan, MRC Human Genetics...) | | PRJNA179300 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (1 day) (Meehan, MRC Human Genetics...) | | PRJNA179301 | Mus musculus | IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (91 day) (Meehan, MRC Human Genetics...) | | PRJNA179302 | Mus musculus | IP of 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (91 day) (Meehan, MRC Human Genetics...) | | PRJNA179303 | Mus musculus | Changes in histone modifications H3K4me2, H3k27me3 and H3K36me3 due to phenobarbital in mice (Meehan, MRC Human Genetics...) |
Less... |
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA174865 | Mus musculus | Dynamic changes in liver 5-hydroxymethylcytosine profiles upon non-genotoxic carcinogen exposure (Meehan, MRC Human Genetics...) | | PRJNA194090 | Mus musculus | Dynamic changes in liver 5-hydroxymethylcytosine profiles upon non-genotoxic carcinogen exposure [Replicated control vs. pb treated study] (Meehan, MRC Human Genetics...) |
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